Skip to main content
Fig. 3 | BMC Genomics

Fig. 3

From: Individual-specific changes in the human gut microbiota after challenge with enterotoxigenic Escherichia coli and subsequent ciprofloxacin treatment

Fig. 3

Samples cluster by patient not phenotype in PCoA plots. a Samples pre-ciprofloxacin treatment. All data points are shown, with black squares highlighting samples obtained during diarrheal episodes. b Samples after antibiotic treatment. Pre-treatment samples summarized as 95 % confidence ellipses (ordiellipse function from the R vegan package). Post-treatment samples shown as points with symbols indicating whether they were derived immediately post-antibiotic treatment, or at 1 and 3 month follow ups. Shifts introduced by antibiotic treatment, and transition to post study microbiota highlighted for selected patients with colored arrows

Back to article page