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Table 3 The enriched GO terms and plant GO SLIM terms in the differentially expressed genes (DEGs) in the blight trees compared to healthy tree revealed by Blast2GO

From: Transcriptome analysis of root response to citrus blight based on the newly assembled Swingle citrumelo draft genome

GO-ID Term FDR P-Value #Test #Ref #not annot in Test #not annot in Ref
Down-regulated plant GO SLIM terms
 GO:0009058 Biosynthetic process 5.12E-05 1.58E-06 660 5048 1241 12083
 GO:0019748 Secondary metabolic process 1.94E-04 7.39E-06 235 1569 1666 15562
 GO:0009056 Catabolic process 4.05E-04 2.11E-05 364 2643 1537 14488
 GO:0006629 Lipid metabolic process 0.015215 0.001265 264 1964 1637 15167
 GO:0006464 Cellular protein modification process 0.017532 0.001541 271 2030 1630 15101
 GO:0005975 Carbohydrate metabolic process 0.027641 0.002561 327 2522 1574 14609
Up-regulated GO terms
 GO:0006075 (1- > 3)-beta-D-glucan biosynthetic process 0.013333 3.99E-05 11 22 1555 17444
 GO:0080165 Callose deposition in phloem sieve plate 0.034774 1.48E-04 7 9 1559 17457
 GO:0005982 Starch metabolic process 0.034774 1.54E-04 73 505 1493 16961
  1. Note: #Test: the number of DEGs in the listed gene set; #Ref: the number of genes belonging to the listed gene set annotated in the Swingle citrumelo genome; # not annot in Test: the number of DEGs not belonging to the listed gene set; # not annot in Ref: the number of genes not belonging to the listed gene set annotated in the Swingle citrumelo genome