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Table 3 The enriched GO terms and plant GO SLIM terms in the differentially expressed genes (DEGs) in the blight trees compared to healthy tree revealed by Blast2GO

From: Transcriptome analysis of root response to citrus blight based on the newly assembled Swingle citrumelo draft genome

GO-ID

Term

FDR

P-Value

#Test

#Ref

#not annot in Test

#not annot in Ref

Down-regulated plant GO SLIM terms

 GO:0009058

Biosynthetic process

5.12E-05

1.58E-06

660

5048

1241

12083

 GO:0019748

Secondary metabolic process

1.94E-04

7.39E-06

235

1569

1666

15562

 GO:0009056

Catabolic process

4.05E-04

2.11E-05

364

2643

1537

14488

 GO:0006629

Lipid metabolic process

0.015215

0.001265

264

1964

1637

15167

 GO:0006464

Cellular protein modification process

0.017532

0.001541

271

2030

1630

15101

 GO:0005975

Carbohydrate metabolic process

0.027641

0.002561

327

2522

1574

14609

Up-regulated GO terms

 GO:0006075

(1- > 3)-beta-D-glucan biosynthetic process

0.013333

3.99E-05

11

22

1555

17444

 GO:0080165

Callose deposition in phloem sieve plate

0.034774

1.48E-04

7

9

1559

17457

 GO:0005982

Starch metabolic process

0.034774

1.54E-04

73

505

1493

16961

  1. Note: #Test: the number of DEGs in the listed gene set; #Ref: the number of genes belonging to the listed gene set annotated in the Swingle citrumelo genome; # not annot in Test: the number of DEGs not belonging to the listed gene set; # not annot in Ref: the number of genes not belonging to the listed gene set annotated in the Swingle citrumelo genome