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Table 1 Significant SNPs in or near the CCL16 gene on chromosome 17 that met our inclusion criteria with pertinent biological information implicating them in CCL16 regulation

From: Variants in CCL16 are associated with blood plasma and cerebrospinal fluid CCL16 protein levels

SNP

Base Pair position

Minor Allele

Major Allele

MAF

Predicted Function

RegulomeDB score

Meta-analysis p-value

     

CSF

Plasma

rs80329614

34303312

C

T

0.1406

downstream

3a

1.666E-19

5.853E-28

rs11080368

34305071

A

C

0.1040

intronic

No data

2.321E-19

1.777E-27

rs11080369

34305164

C

A

0.1042

intronic

1f

2.321E-19

1.777E-27

rs33995560

34303771

C

T

0.1122

UTR3

No data

2.941E-19

2.094E-27

rs7216969

34305048

A

G

0.1040

intronic

6

2.941E-19

2.094E-27

rs150951362

34304264

A

G

0.1008

UTR3

6

1.65E-17

2.05E-20

rs75236781

34306470

C

G

0.0613

intronic

6

2.958E-17

3.942E-20

rs149197550

34295254

T

C

0.0641

intergenic

No data

8.32E-16

9.20E-18

rs4795104

34287400

T

A

0.0639

intergenic

6

9.626E-16

1.015E-17

rs4796144

34293003

A

G

0.0641

intergenic

6

9.626E-16

1.015E-17

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BMC Genomics

ISSN: 1471-2164

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