From: Efficient sequential and parallel algorithms for finding edit distance based motifs
Instance | Metric | EMS1 | EMS2 | EMS2M | EMS2P threads | ||||
---|---|---|---|---|---|---|---|---|---|
 |  |  |  |  | 1 | 2 | 4 | 8 | 16 |
(8,1) | time | 0.11 s | 0.13 s | 0.12 s | 0.09 s | 0.08 s | 0.06 s | 0.05 s | 0.06 s |
 | memory | 2.69 MB | 4.25 MB | 3.17 MB | 2.67 MB | 3.20 MB | 3.55 MB | 6.02 MB | 7.99 MB |
(12,2) | time | 19.87 s | 15.60 s | 16.62 s | 2.71 s | 1.94 s | 1.44 s | 0.89 s | 0.55 s |
 | memory | 34.28 MB | 210.47 MB | 126.91 MB | 84.98 MB | 104.60 MB | 125.18 MB | 142.82 MB | 150.23 MB |
(16,3) | time | 1.74 h | 23.73 m | 26.79 m | 3.73 m | 2.32 m | 1.38 m | 48.58 s | 36.93 s |
 | memory | 8.39 GB | 11.62 GB | 6.97 GB | 8.55 GB | 10.21 GB | 10.53 GB | 9.84 GB | 9.91 GB |
(9,2) | time | 10.84 s | 1.72 s | 3.02 s | 1.12 s | 0.96 s | 0.78 s | 0.49 s | 0.35 s |
 | memory | 3.44 MB | 26.67 MB | 17.04 MB | 42.86 MB | 57.76 MB | 54.77 MB | 59.85 MB | 66.53 MB |
(11,3) | time | 33.48 m | 1.91 m | 3.57 m | 45.85 s | 30.78 s | 19.68 s | 13.49 s | 9.78 s |
 | memory | 92.86 MB | 477.12 MB | 313.33 MB | 2.27 GB | 2.63 GB | 2.65 GB | 2.55 GB | 2.60 GB |
(13,4) | time | - | 1.08 h | 1.76 h | 44.03 m | 26.16 m | 14.51 m | 8.62 m | 6.82 m |
 | memory | - | 8.26 GB | 5.58 GB | 149.60 GB | 179.66 GB | 180.13 GB | 168.80 GB | 172.74 GB |