From: Reconstructing directed gene regulatory network by only gene expression data
Covariance | ARACNE | CLR | GENIE3 | TIGRESS | CBDN |
---|---|---|---|---|---|
(a) Simulation without | |||||
any noise | |||||
0.1 | 0.8367 | 0.8009 | 0.8765 | 0.8157 | 0.8750 |
0.2 | 1 | 1 | 1 | 0.8410 | 1 |
0.4 | 1 | 1 | 1 | 0.8502 | 1 |
0.6 | 1 | 1 | 1 | 0.8272 | 1 |
0.8 | 1 | 1 | 1 | 1 | 1 |
b) Simulation with 1/3 | |||||
random noise | |||||
0.1 | 0.6304 | 0.6358 | 0.5879 | 0.8107 | 0.8571 |
0.2 | 0.9192 | 0.9846 | 0.9884 | 0.8162 | 1 |
0.4 | 1 | 1 | 1 | 0.8327 | 1 |
0.6 | 1 | 1 | 1 | 0.8557 | 1 |
0.8 | 1 | 1 | 0.9985 | 0.8338 | 1 |
(c) Simulation with 2/3 | |||||
random noise | |||||
0.1 | 0.6904 | 0.6172 | 0.6813 | 0.6241 | 0.8571 |
0.2 | 0.6889 | 0.8086 | 0.8480 | 0.8309 | 1 |
0.4 | 0.9531 | 0.9599 | 0.9437 | 0.8428 | 1 |
0.6 | 1 | 1 | 0.9931 | 0.8424 | 0.8750 |
0.8 | 0.9333 | 0.9907 | 0.9807 | 0.8058 | 0.8750 |