From: Reconstructing directed gene regulatory network by only gene expression data
Covariance | ARACNE | CLR | GENIE3 | TIGRESS | CBDN |
---|---|---|---|---|---|
(a) Simulation without | |||||
any noise | |||||
0.1 | 0.8775 | 0.9332 | 0.9747 | 0.7916 | 0.9306 |
0.2 | 0.9961 | 0.9963 | 0.9985 | 0.8034 | 1 |
0.4 | 1 | 1 | 1 | 0.8245 | 1 |
0.6 | 1 | 1 | 1 | 0.7975 | 1 |
0.8 | 1 | 1 | 1 | 0.8015 | 1 |
(b) Simulation with | |||||
1/3 random noise | |||||
0.1 | 0.7261 | 0.8864 | 0.8369 | 0.7812 | 0.8269 |
0.2 | 0.9166 | 0.9836 | 0.9877 | 0.7940 | 0.9286 |
0.4 | 1 | 1 | 1 | 0.8249 | 1 |
0.6 | 1 | 1 | 1 | 0.7845 | 1 |
0.8 | 1 | 1 | 0.9996 | 0.8387 | 1 |
(c) Simulation with 2/3 | |||||
random noise | |||||
0.1 | 0.6364 | 0.5499 | 0.5748 | 0.5848 | 0.7500 |
0.2 | 0.7797 | 0.8680 | 0.9146 | 0.7735 | 0.8462 |
0.4 | 0.9825 | 0.9905 | 0.9988 | 0.8126 | 1 |
0.6 | 0.9977 | 1 | 0.9994 | 0.8465 | 0.9000 |
0.8 | 0.8804 | 0.9920 | 0.9911 | 0.8146 | 1 |