From: Reconstructing directed gene regulatory network by only gene expression data
Covariance | ARACNE | CLR | GENIE3 | TIGRESS | CBDN |
---|---|---|---|---|---|
(a) Simulation without | |||||
any noise | |||||
0.1 | 0.7643 | 0.8991 | 0.9225 | 0.8562 | 0.8646 |
0.2 | 0.9988 | 0.9997 | 0.9999 | 0.8352 | 0.9762 |
0.4 | 1 | 1 | 1 | 0.8448 | 0.9286 |
0.6 | 1 | 1 | 1 | 0.8483 | 0.9902 |
0.8 | 1 | 1 | 1 | 0.8470 | 1 |
(b) Simulation with | |||||
1/3 random noise | |||||
0.1 | 0.7018 | 0.7831 | 0.8208 | 0.8151 | 0.7561 |
0.2 | 0.9617 | 0.9936 | 0.9985 | 0.8409 | 0.9748 |
0.4 | 1 | 0.9999 | 1 | 0.8738 | 0.9688 |
0.6 | 1 | 1 | 1 | 0.9032 | 1 |
0.8 | 1 | 0.9994 | 0.9998 | 0.9300 | 1 |
(c) Simulation with 2/3 | |||||
random noise | |||||
0.1 | 0.6266 | 0.5486 | 0.6385 | 0.6712 | 0.7561 |
0.2 | 0.6196 | 0.7746 | 0.8675 | 0.8139 | 0.9625 |
0.4 | 0.9893 | 0.9967 | 0.9991 | 0.8673 | 0.8600 |
0.6 | 0.9948 | 0.9982 | 0.9982 | 0.8828 | 0.9697 |
0.8 | 0.9286 | 0.9943 | 0.9942 | 0.9043 | 1 |