Fig. 8
From: MBDDiff: an R package designed specifically for processing MBDcap-seq datasets
Apply MBDDiff to endometrial cancer datasets. a Density plot of GC content grouped by different levels of methylation for all 100Â bp windows across the whole genome of one example endometrial sample with recurrence outcome; (b) Distribution of background noise and promoter counts for one example endometrial sample with recurrence outcome; (c) 3D PCA plot of sample relation, R indicates samples with recurrence outcome, NR indicates samples with non-recurrence outcome; (d) Heatmap of selected promoters for 6 samples