Table 1 Top 50 up-regulated and down-regulated genes found using edgeR
Up-regulated genes | logFCa | FDRb | Down-regulated genes | logFCa | FDRb |
|---|---|---|---|---|---|
Slc14a2 | 8.39 | 5.0E-117 | Krt2 | −4.52 | 1.7E-57 |
Gm16026 | 10.57 | 8.7E-111 | Acsm1 | −3.35 | 8.8E-13 |
Lrrn4 | 9.33 | 8.7E-111 | 1100001G20Rik | −2.54 | 1.6E-12 |
Cml2 | 9.16 | 4.6E-94 | F3 | −1.51 | 2.1E-12 |
Sp110 | 7.82 | 7.4E-90 | Tac4 | −1.79 | 7.0E-12 |
Gm15753 | 8.36 | 4.0E-87 | Cyp2w1 | −2.50 | 9.6E-12 |
Prr18 | 6.13 | 1.4E-75 | Cacng1 | −1.86 | 6.5E-10 |
C130026I21Rik | 9.14 | 2.0E-75 | Ces2f | −1.99 | 4.8E-09 |
Echdc3 | 4.48 | 2.0E-66 | Paqr5 | −1.34 | 6.3E-09 |
AI427809 | 5.10 | 6.2E-61 | Cyp2f2 | −2.11 | 6.9E-09 |
Dhtkd1 | 4.31 | 2.0E-58 | Gm1110 | −2.87 | 5.0E-08 |
Gm7029 | 10.86 | 3.0E-58 | Sebox | −2.09 | 9.8E-08 |
Gm5335 | 9.11 | 3.2E-58 | Wnt7b | −1.36 | 1.0E-07 |
Ccdc60 | 6.30 | 1.5E-56 | Gm26888 | −2.27 | 2.0E-07 |
Apol7b | 7.45 | 3.1E-55 | Slc6a19 | −1.26 | 2.5E-07 |
0610040J01Rik | 4.75 | 5.3E-53 | Ucp3 | −1.67 | 5.0E-07 |
Ccser1 | 5.02 | 2.7E-52 | Capn9 | −2.16 | 9.9E-07 |
Gm8674 | 9.03 | 9.9E-51 | Actc1 | −1.74 | 1.5E-06 |
Fbxo16 | 5.43 | 1.6E-50 | H19 | −1.39 | 1.5E-06 |
BB557941 | 8.95 | 2.5E-50 | Lypd6 | −1.48 | 1.6E-06 |
Gm12114 | 7.01 | 3.2E-50 | Slc46a1 | −1.22 | 3.5E-06 |
Gm13191 | 8.71 | 4.6E-50 | Hsd17b14 | −1.35 | 5.6E-06 |
Tpo | 7.68 | 4.6E-50 | Csrp3 | −1.21 | 6.7E-06 |
Gm16239 | 7.43 | 3.0E-49 | Gm1078 | −2.06 | 7.2E-06 |
Kcnk15 | 7.19 | 3.5E-49 | Awat1 | −1.09 | 1.4E-05 |
Chrm3 | 4.67 | 5.0E-49 | Gm10228 | −1.47 | 1.4E-05 |
Mecom | 4.37 | 7.2E-49 | Plin5 | −1.57 | 1.5E-05 |
Gm7592 | 3.94 | 5.4E-48 | Pdk4 | −2.07 | 1.6E-05 |
Tie1 | 3.54 | 8.1E-48 | Fam57b | −1.32 | 1.6E-05 |
C86695 | 10.24 | 1.5E-46 | Gfra2 | −1.23 | 1.7E-05 |
Dlgap2 | 7.01 | 2.9E-46 | Mybph | −1.42 | 2.6E-05 |
Colgalt2 | 4.66 | 4.1E-46 | Myoz2 | −1.43 | 3.4E-05 |
Ush2a | 7.52 | 2.4E-45 | Fabp3 | −1.13 | 3.4E-05 |
A530040E14Rik | 6.04 | 1.0E-44 | Tfr2 | −1.74 | 3.5E-05 |
B3gntl1 | 3.71 | 4.4E-44 | Zbtb16 | −1.80 | 3.6E-05 |
Gm10653 | 5.36 | 5.3E-44 | Skint10 | −1.52 | 3.9E-05 |
Gm12495 | 8.97 | 5.5E-44 | Mustn1 | −1.18 | 4.5E-05 |
Dcc | 8.26 | 3.8E-43 | AU021092 | −1.40 | 4.8E-05 |
AU019990 | 6.31 | 7.2E-42 | Tspear | −1.53 | 4.9E-05 |
Gm16028 | 10.30 | 3.8E-41 | Krtap20-2 | −1.67 | 5.0E-05 |
Arhgap8 | 3.83 | 1.3E-38 | Alox15 | −2.47 | 5.3E-05 |
Oas1a | 5.00 | 2.6E-38 | Krt36 | −0.95 | 5.4E-05 |
AI481877 | 6.11 | 3.1E-38 | Rarres1 | −1.10 | 5.7E-05 |
BC026585 | 3.29 | 6.6E-38 | P2ry4 | −1.22 | 7.1E-05 |
Sp140 | 4.27 | 5.1E-37 | Cyp17a1 | −1.82 | 7.7E-05 |
Aqp9 | 3.00 | 7.9E-37 | Ankrd2 | −1.49 | 8.1E-05 |
Abcb5 | 9.79 | 1.0E-36 | Foxq1 | −1.19 | 8.1E-05 |
Gm12724 | 6.50 | 1.7E-36 | Vgll2 | −1.62 | 8.6E-05 |
Defb13 | 7.65 | 1.9E-36 | Gm12551 | −1.16 | 8.8E-05 |
Ric3 | 4.41 | 3.2E-36 | Pdlim3 | −1.09 | 1.1E-04 |