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Table 3 Downstream targets of Lhx2 found to be differentially regulated

From: RNA-Seq analysis of Gtf2ird1 knockout epidermal tissue provides potential insights into molecular mechanisms underpinning Williams-Beuren syndrome

Gene

logFCa

FDRb

#c

Gene

logFCa

FDRb

#c

Ush2a

7.52

3.90E-46

TA

Mef2c

−0.66

4.10E-02

TA

0610040J01Rik

4.75

6.90E-54

TA

Cd34

−0.71

1.90E-02

U

Sprr2d

3.47

2.20E-04

TA

Thbs4

−0.71

3.70E-02

TA

Ceacam1

3

4.90E-27

TA

Phactr1

−0.73

2.70E-02

TA

Samd12

2.56

5.90E-08

TA

6330403K07Rik

−0.75

2.50E-02

TA

Tfec

2.29

6.60E-06

TA

Tspan12

−0.77

1.60E-02

TA

Gucy1a3

2.02

1.70E-13

TA

Loxl2

−0.79

4.40E-02

TA

Hsp90aa1

1.97

6.10E-08

TA

Aldh1a2

−0.8

8.60E-03

TA

Gbp7

1.89

1.90E-07

TA

Aldh1a2

−0.8

8.60E-03

TA

Il1f9

1.76

5.30E-08

TA

Fbxo40

−0.82

2.68E-02

TA

Gbp2

1.71

1.70E-05

TA

Htra3

−0.83

1.90E-02

TA

Robo1

1.7

2.80E-16

TI

Cxcl14

−0.84

1.70E-02

TA

Iigp1

1.69

1.60E-03

TA

Slc43a1

−0.84

1.70E-02

TA

Ccl2

1.51

7.10E-07

TI

Dact1

−0.87

3.30E-02

TA

Fam171b

1.49

2.20E-06

TA

Dysf

−0.87

4.30E-03

TA

Serpinb11

1.43

3.50E-03

TA

C1qtnf9

−0.89

2.80E-02

TA

Serpinb6c

1.36

8.50E-03

TA

Ndn

−0.89

2.70E-02

TA

Scml2

1.28

5.90E-05

TA

Sobp

−0.94

7.80E-03

TA

Slc7a11

1.2

6.14E-03

TA

Krtap13-1

−0.95

8.00E-03

TA

Dsc1

1.19

4.30E-03

TA

Krtap17-1

−0.95

3.60E-03

TA

Ifi47

1.05

4.80E-02

TA

Has1

−0.96

4.40E-02

TI

Mphosph10

1.03

8.70E-03

TI

Lhx8

−1

8.90E-03

TA

Esd

1.02

9.00E-05

TA

Ranbp17

−1.01

4.20E-02

TA

Tdrd7

0.97

5.70E-04

TA

Gnb3

−1.09

4.00E-02

TA

Parp8

0.94

1.30E-04

TI

Pdlim3

−1.09

1.00E-04

TA

Itsn2

0.9

1.50E-02

TA

Krtap8-1

−1.16

6.50E-03

TA

Lce1h

0.86

3.40E-02

TA

Ttn

−1.17

4.00E-02

TA

Casp1

0.85

4.90E-02

TA

Il22ra2

−1.19

2.10E-02

TI

Cast

0.83

1.20E-02

TA

Krtap16-3

−1.19

1.70E-03

TA

Fgf1

0.79

3.90E-03

TI

Krtap14

−1.29

1.40E-03

TA

Lce1e

0.79

4.40E-02

TA

Ankrd2

−1.49

7.50E-05

U

Plxna2

0.55

4.40E-02

TA

Acsm1

−3.35

8.10E-13

TA

Cyp2d22

−0.61

3.60E-02

TA

Chi3l4

−6.56

1.96E-03

TA

  1. aLogFC: fold change expressed as log base 2
  2. bFDR: p value adjusted using Benjamini Hochberg method implemented in edgeR
  3. cMechanism by which Lhx2 acts on target gene, TA: Transcription activator, TI: Transcription inhibitor, U: unknown