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Table 5 Primers used for qRT-PCR validation

From: RNA sequencing analysis to capture the transcriptome landscape during skin ulceration syndrome progression in sea cucumber Apostichopus japonicus

Gene

Primer Sequence (5′-3′)

Cytochrome b

Cytb-F: TGAGCCGCAACAGTAATC

Cytb-R: AAGGGAAAAGGAAGTGAAAG

Complement component 3

AjC3-F: GCGTTGTTTCGTTCAACAAGGGGA

AjC3-R: GCCATTCACTGGAGGTGTGCCA

Complement factor B

Bf-F: ATTATCTCGCAACAGCGATCC

Bf-R: GGGCAACCACACCGGCTTCTCCA

IRAK4-like

IRAK4-F: TACACGTCAGATCGGGATGA

IRAK4-R: TAAACGACGAGCGTACCACA

NF-kB transcription factor Rel

Rel-F: TGCGAAGCCACATCCATT

Rel-R: AGGGCATCCTTTAAGTCAGC

MAPKKK

MAPKKK -F: GAATCAGAGGAGATAGATGTGGAGA

MAPKKK -R: AGGAGGAGGAGGAAGACGAC

Serine/threonine-protein kinase TBK1-like

TBK1-F: AGATGATGTTGTCCATTCTCG

TBK1-R: ACAGGAGGAAGTGATGTGCT

TGF beta-activated kinase

TAK -F: TCTCTGTAGCCTCCTTTGACG

TAK -R: CTCGGTCTTCCAACCAACAC

BIRC2

BIRC2-F: TCAGGCACGAGTGACAAAGT

BIRC2-R: GCATGAGCCATTCACATCTCA

NF-kB p105 subunit

p105-F: GCAACACACCCCTCCATCTT

p105-R: TCTTCTTCGCTAACGTCACACC

MyD88

MyD88-F: CCGATGTAGGAGGATGGTAGTAG

MyD88-R: CACAGTAAGGTGCTGAAGAATGC

HSP 70

HSP 70-F: AAGAGCACAGGCAAAGAG

HSP 70-R: TGATGATGGGTTGGCACA

HSP 90

HSP 90-F: TATGAAAGCCTGACAGACGCAAGC

HSP 90-R: TAACGCAGAGTAAAAGCCAACACC

Matrix metalloproteinase-24

MMP-F: CGATTCAGTCTTCCCTGGTG

MMP-R: ACCGTCATCAACTTTCCTGGT

Apoptosis regulator BAX-like

BAX-F: GCCGTGGGACTGACTTTACA

BAX-R: TCCATCTCGTAGTTCTCTCAACG

Thioredoxin

TRx-F: GCTGGTGACAAACTGGTGAT

TRx -R: TGAGAAAGACAACGTCGGTA

CLECT

CLECT-F: GACGGCTTGTCCAGAGTT

CLECT-R: AGGTCCATTGTTGGGTTC

CLEC19A

CLEC19A-F: ATGCAGCGAGAAGATGGAGT

CLEC19A-R: TGGCAGGATATGCCCTAGAT

GalNAc-specific lectin

GalNAc -F: CCATCCTTCAGGGCAGATAA

GalNAc -R: TTCATCGACCAAAATGCAGA

Major yolk protein

MYP-F: AGGAGGGAGACATTGCTT

MYP-R: ATGATGCTTTCTGGGTTG

PDRG 1

PDRG1-F: AATTGGAGGAACTCGCTGAA

PDRG1-R: TTGCTTATCGCCTTCTTGTG