Fig. 4

Distribution of transposable elements (TE) in the Bru1 surrounding regions of LA Purple (S.officinarum), AP85-441 (S. spontaneum), and the hybrid cultivar, R570. Notes: The TE names listed in the bottom row consist of four parts separated by an underscore” –“. The first part indicates the location, e.g., 01–02 indicates between gene 1 and gene 2 and 05–05 indicates within gene 5. The second part indicates full length (TE-f) or partial (TE-p). The third part indicates orientation (AS = Antisense, S = Sense). Colum 1 contains the clone identifiers: the species name, BAC name, and accession (if any) separated by underscore and the remaining columns score the presence (green) or absence (red) of each TEs listed at the bottom. A superscript “T” indicates a likely full length TE that was truncated due to its presence at the end of BAC and a superscript “S” indicates a solo LTR. The presence and absence of gene 10 (dark blue highlight in bottom row) and gene 11b (dark blue highlight) is also given for reference because these two genes are present in S. officinarum BAC sequences but absent in S. spontaneum BAC sequences. The blank cells in white indicate no data available