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Table 5 The feature of syntenic genes on Saccharum and sorghum bacterial artificial chromosome (BAC) clones

From: Comparative structural analysis of Bru1 region homeologs in Saccharum spontaneum and S. officinarum

   S. spontaneum S. officinarum Saccharum hybrid-S. spontaneum Saccharum hybrid-S. officinarum Saccharum hybrid recombination Sorghum
   Ss-75D04 Ss-23 K06 So-99P01 So-57E04 So-96B11 So-146H19 15 N23 197G04 142 J21 135P16 253G12 53A11 CIR9O20/12E03 24P17
                Sorghum
Gene1 DNA 810 813 - - 813 - - - - - - 996 - 561
  Exons 1 1 - - 1 - - - - - - 2 - 1
  cDNA 810 813 - - 813 - - - - - - 741 - 561
  Amino acids 269 270 - - 270 - - - - - - 246 - 186
Gene2 DNA 1180 1195 - - 1195 1195 1192 - - - - 1195 - 1192
  Exons 2 2 - - 2 2 2 - - - - 2 - 2
  cDNA 1086 1101 - - 1101 1101 1098 - - - - 1101 - 1098
  Amino acids 361 366 - - 366 366 365 - - - - 366 - 365
Gene3 DNA 3216 3214 - - 3223a 3356 3449 - - - - 3203 - 3193
  Exons 7 7 - - 7 7 7 - - - - 7 - 7
  cDNA 948 948 - - 953a 948 975 - - - - 948 - 975
  Amino acids 315 315 - - -a 315 324 - - - - 315 - 324
Gene4 DNA 3894 8712 - - 3910 3516 3888 - - - - 3515 - 3330
  Exons 10 10 - - 10 10 10 - - - - 10 - 10
  cDNA 1002 1002 - - 1002 993 960 - - - - 1002 - 1032
  Amino acids 333 333 - - 333 330 319 - - - - 333 - 343
Gene5 DNA 6972a 6954a - - 12770 7312 7912 - - - 7328 7300 - 6964
  Exons 14a 14a - - 14 14 14 - - - 14 14 - 14
  cDNA 2706a 2671a - - 2667 2676 2676 - - - 2586 2670 - 2529
  Amino acids -a -a - - 888 891 891 - - - 861 889 - 842
Gene6 DNA 3986 4542 3996 3987 3999 4007 3958 - - - 3990 3988 4294 4144
  Exons 8 8 8 8 8 8 8 - - - 8 8 8 7
  cDNA 876 873 873 873 873 873 882 - - - 882 882 882 891
  Amino acids 291 290 290 290 290 290 293 - - - 293 293 293 296
Gene7 DNA 3829 3779 3782 3805 3781 3775 3977 3298# 1876# - 3814 3812 3962 3717
  Exons 8 8 8 8 8 8 8 7# 6# - 8 8 8 8
  cDNA 1092 1092 1092 1092 1092 1092 1092 1023# 966# - 1092 1092 1092 1086
  Amino acids 363 363 363 363 363 363 363 340# 321# - 363 363 363 361
Gene8 DNA 2988 2982 2974 2991 2993a 2991 2976 2982 2993 - 2991 2991 3003 3003
  Exons 5 5 5 5 5a 5 5 5 6 - 5 5 5 5
  cDNA 2412 2421 2376 2415 2417a 2415 2406 2421 2367 - 2415 2415 2427 2421
  Amino acids 803 806 791 804 -a 804 801 806 788 - 804 804 808 806
Gene9 DNA 1632 1638 1632 1626 - - 1632 1413 1632 - 1629 - 1575 X
  Exons 1 1 1 1 - - 1 1 1 - 1 - 1 X
  cDNA 1632 1638 1632 1626 - - 1632 1413 1632 - 1629 - 1575 X
  Amino acids 543 545 543 541 - - 543 470 543 - 542 - 524 X
Gene10 DNA X X 17423a 22357a - - X X 620a 744a 1057a - 1066 X
  Exons X X 6a 6a - - X X 3a 5a 4a - 6 X
  cDNA X X 490a 436a - - X X 427a 393a 501a - 534 X
  Amino acids X X N/A a N/A a - - X X N/Aa N/A a 166a - 177 X
Gene11a DNA X X 4273 4059 - - X X 4043 4060 4062 - 1566#/33480 X
  Exons X X 7 6 - - X X 6 6 6 - 4#/6 X
  cDNA X X 1029 1029 - - X X 1029 1029 1029 - 645#/993 X
  Amino acids X X 342 342 - - X X 342 342 342 - 214#/330 X
Gene11b DNA 3293 3832 3671 3678 - - 9988 3271 5684 9146 3674 - 6477 4616
  Exons 6 6 6 6 - - 6 6 7 6 6 - 7 6
  cDNA 948 948 948 948 - - 948 948 927 948 948 - 954 957
  Amino acids 315 315 315 315 - - 315 315 308 315 315 - 317 318
Gene12 DNA - 1836 - 1841 - - 2053 1840 1877 1877/1881/18811 1841 - - 1846
  Exons - 3 - 3 - - 3 3 3 3/3/3 3 - - 3
  cDNA - 1536 - 1539 - - 1146 1536 1539 1671/1611/1611 1539 - - 1545
  Amino acids - 511 - 512 - - 381 511 512 556/536/536 512 - - 514
  1. Notes: a pseudo gene # BAC border X deletion - out of BACs
  2. 1. Three genes of 12 were annotated in the BAC 135P16 of R570