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Table 3 Comparison of estimated repeat numbers in terms of RMSE for real exome data for JPT individuals in 1KGP

From: Short tandem repeat number estimation from paired-end reads for multiple individuals by considering coalescent tree

Method

CoalescentSTR

CoalescentSTR

Basic model

lobSTR

RepeatSeq

STRViper

  

(shuffled)

    

RMSE

1.33

2.38

9.44

1.63

1.63

1.63

  1. The best result is in bold
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BMC Genomics

ISSN: 1471-2164

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