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Table 4 Estimated repeat numbers from WGS data from HiSeq 2000 for NA12878 and their corresponding RMSE values with the repeat numbers estimated from PacBio sequencing data for NA12878

From: Short tandem repeat number estimation from paired-end reads for multiple individuals by considering coalescent tree

Method Estimated repeat numbers RMSE
CoalescentSTR 28/26 0.44
CoalescentSTR (shuffled) 25/25 2.15
Basic Model 33/32 5.46
lobSTR 31/31 4.50
RepeatSeq 31/31 4.50
STRViper 31.12/31.12 4.61
  1. The best result is in bold