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Table 4 Estimated repeat numbers from WGS data from HiSeq 2000 for NA12878 and their corresponding RMSE values with the repeat numbers estimated from PacBio sequencing data for NA12878

From: Short tandem repeat number estimation from paired-end reads for multiple individuals by considering coalescent tree

Method

Estimated repeat numbers

RMSE

CoalescentSTR

28/26

0.44

CoalescentSTR (shuffled)

25/25

2.15

Basic Model

33/32

5.46

lobSTR

31/31

4.50

RepeatSeq

31/31

4.50

STRViper

31.12/31.12

4.61

  1. The best result is in bold
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BMC Genomics

ISSN: 1471-2164

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