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Table 2 Edge permutation: the p-values of pathways are computed from the symbiotic (Lane 1) and aposymbiotic (Lane 2) Bugula data. This table presents the most significant divergence in pathway results, using the criteria described in the “Methods” Section, they are declared differentially significant

From: Inferring metabolic pathway activity levels from RNA-Seq data

Pathway p-value from p-value from ProbDiff
  symbiotic Bugula aposymbiotic Bugula  
ko04146 .99 .05 .94
ko03008 .99 .05 .94
ko03013 .99 .05 .94
ko00983 .99 .05 .94
ko04530 .99 .05 .94
ko00400 .01 .99 .98
ko04122 .99 .03 .97
ko04713 .99 .01 .99
ko00130 .01 .75 .74
ko00120 .01 .99 .98
ko00072 .99 .01 .98
ko00120 .99 .01 .98
ko00230 .04 .99 .95
ko00627 .99 .03 .97
ko00770 .99 .01 .99
ko00980 .99 .03 .97
ko04630 .99 .01 .99