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Table 3 Transcripts linked to male reproduction based on expression profiles and annotation

From: Sex-biased gene expression and sequence conservation in Atlantic and Pacific salmon lice (Lepeophtheirus salmonis)

Functional category Transcript description Degree of Male-bias (FC) Probes SwissProt Accession CDD Accession Ref
Protease inhibitors Keratin-associated protein 6-2 30.8 - 277.1 C088R043 O08884 smart00131 [95, 96]
Kunitz_BPTI MS C084R101 NA smart00131 [69, 95–100]
Kunitz_BPTI MS C057R056 NA smart00131
Kunitz_BPTI MS C259R083 NA pfam00014
Kunitz/BPTI-like toxina MS C259R052 B5L5M7 pfam00014
Papilina MS C063R028 Q868Z9 pfam00014 [101]
Papilina MS C183R014
Papilina MS C066R049
Papilina MS C142R005
Tissue factor pathway inhibitor 2a MS C213R048 O35536 pfam00014 [100, 102]
Antichymotrypsin-2a 2.9 - 4.2 C077R006 P80034 cd00172 [59, 95, 96, 101, 103]
SERine Proteinase INhibitors (serpins) MS C215R048 NA cd00172
Serpin-Z10 1.6 - 2.4 C182R015 Q9SIR9 cd00172
Kinases Adenylate kinase isoenzyme 1 2.1 - 10.4 C104R155 P05081 TIGR01360 [96, 104]
Adenylate kinase isoenzyme 1 1.9 – 4.8 C153R147 P00571 TIGR01360
Adenylate kinase isoenzyme 1 2.1 - 7.1 C031R080
Casein kinase I isoform alpha MS C070R100 P97633 cd14016 [96, 105]
Casein kinase I isoform epsilon 1.8 - 4.8 C244R145 Q9JMK2 cd00180
Hexokinase type 2 2.5 - 7.9 C066R139 Q9NFT7 COG5026 [95, 106]
Probable adenylate kinase isoenzyme F38B2.4 1.9 - 5.7 C212R032 Q20140 TIGR01360 [96, 104]
Probable adenylate kinase isoenzyme F38B2.4 2.0 - 5.7 C028R063
Pyruvate kinase 2.3 – 5.0 C020R004 O62619 pfam00224 [95, 96]
Pyruvate kinase 2.0 – 4.6 C015R041 cd00288
Pyruvate kinase 1.9 - 5.0 C155R159
Proteases Calpain-A catalytic subunit MS C197R005 Q11002 smart00720 [95, 102]
Calpain-A catalytic subunit MS C018R134 smart00230
Carboxypeptidase Ba MS C161R058 P04069 cd03860 [102, 106]
Cytosolic non-specific dipeptidase MS C261R120 Q3ZC84 COG0624 [102, 106, 107]
Cytosolic non-specific dipeptidase 1.9 - 2.9 C145R086 Q9D1A2 COG0624
Proprotein convertase subtilisin/kexin type 5a 2.5 - 4.2 C118R013 Q9NJ15 cd00064 [96]
Serine protease persephone MS C118R020 Q9VWU1 smart00020 [61]
Testisin 2.2 – 9.8 C007R130 Q9JHJ7 smart00020 [108, 109]
Tryp_SPc, Trypsin-like serine protease 5.5 – 322.5 C158R134 NA smart00020 [95, 96, 103]
Tryp_SPc, Trypsin-like serine protease MS C009R051
Tryp_SPc, Trypsin-like serine protease MS C008R159
Zinc metalloproteinase nas-15a 2.1 - 3.7 C134R018 P55115 cd04280 [95, 103]
Prostasinab MS C135R082 Q16651 cd00190 [102, 110]
ZnMc_adamalysin_II_like MS C083R024 NA cd04269 [96, 102]
Proclotting enzyme heavy chain MS C006R078 P21902 smart00020 [111]
Gamma-glutamyltranspeptidase 1b 1.7 – 3.4 C120R152 P20735 cl19223 [112]
pH regulation Carbonic anhydrase 1 MS C183R004 P83299 cd00326 [96, 113–115]
Carbonic anhydrase 9 MS C196R116 Q8VHB5 cd00326
Carbonic anhydrase 9 MS C131R016
Carbonic anhydrase 9 MS C161R087
Structural Actin MS C223R146 Q92192 PTZ00004 [106, 116]
Lamin Dm0 1.5 - 6.6 C220R106 P08928 pfam00038 [117]
Outer dense fiber protein 2-like 2.5 - 5.2 C121R150 Q08B20 pfam02463 [51, 106]
Kelch-like protein 20 MS C022R130 Q5R7B8 NA [96, 118]
Tubulin alpha-2 chain MS C160R074 P06604 cd02186 [95, 106]
Transport Solute carrier family 15 member 1 4.1 - 9.3 C170R033 P46059 TIGR00926 [96, 106]
Solute carrier family 2, facilitated glucose transporter member 1 1.5 - 2.8 C192R047 P11166 pfam00083
Sodium/glucose cotransporter 4 1.6 – 3.1 C170R069 Q2M3M2 pfam00474
Solute carrier family 22 member 6-B 2.5 - 4.3 C072R016 Q66J52 TIGR00898
Sodium-dependent nutrient amino acid transporter 1 MS C167R125 B4JMC1 pfam00209
Aquaporin-12Ab (LsGlp1_v1; [81]) 1.7 - 5.3 C096R035 Q8IXF9 NA [96, 119]
Aquaporin-3 (Lsaqp12L2; [81]) 3.7 - 10.4 C030R103 Q8R2N1 cd00333
Other Mucin-like glycoprotein 3.3 - 9.9 C218R155 NA pfam01456 [102, 120]
Major royal jelly protein 3a MS C089R070 Q17060 NA [121–124]
Chorion peroxidase heavy chaina MS C176R138 Q9VEG6 pfam03098 [125, 126]
Chorion peroxidase heavy chaina MS C154R094
Peroxidasea MS C026R132 Q01603 pfam03098
Energy Fructose-bisphosphate aldolase 2.0 – 3.4 C230R040 O52402 PRK09197 [59, 80, 104]
Fructose-bisphosphate aldolase 1.8 – 3.0 C085R145 P14540 PRK09197
Fructose-bisphosphate aldolase 1.9 – 3.3 C069R104 P14540 cd00946
Glycogen phosphorylase 1.7 – 2.5 C107R029 Q9XTL9 cd04300
Glycogen phosphorylase 1.6 – 3.2 C085R148 Q9XTL9 cd04300
Glycogen phosphorylase, brain form 1.6 – 3.5 C171R004 Q3B7M9 cd04300
Male Fertility Protein ref(2)Pb 1.6 - 3.9 C036R126 Q24629 cd14320 [127]
  1. References are provided based on the identification of similarly annotated sequences or proteins involved in male reproduction (e.g. spermatogenesis, seminal fluid proteins, testis expression) in related organisms. The degree of male-bias is indicated by a range of fold change (FC) across populations while MS indicates the listed probes showed male-specific expression. Transcripts denoted with a have a signal peptide for secretion (SwissProt) while those with b were annotated using e < 10-5 due to the absence of homology at higher stringency. Transcripts without annotation are represented by NA (no annotation). Each transcript has a unique contig ID which can be found in Additional file 2 using the probes listed here
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BMC Genomics

ISSN: 1471-2164

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