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Table 2 The number of differentially expressed genes for pairwise and triplewise comparisons between growth conditions

From: Lactobacillus oligofermentans glucose, ribose and xylose transcriptomes show higher similarity between glucose and xylose catabolism-induced responses in the early exponential growth phase

 

20 h

24 h

30 h

No. of genes

Up, %

Down, %

No. of genes

Up, %

Down, %

No. of genes

Up, %

Down, %

Pairwise comparisonsa

 G/R

268

53

47

374

46

54

292

47

53

 G/X

61

57

43

145

34

66

279

45

55

 X/R

289

52

48

260

56

44

197

58

42

Triplewise comparisonsb

 X ≠ G ≈ R

13

46

54

36

92

8

68

66

34

 R ≠ G ≈ X

140

48

52

121

62

38

65

49

51

 G ≠ R ≈ X

29

66

34

52

50

50

114

45

55

 G ≠ R ≠ X

12

  

17

  

7

  
  1. Other designations used: Up upregulation, Down downregulation
  2. a G indicates glucose, R ribose, X xylose. Notation G/R means the comparison between glucose and ribose transcriptomes, where up- and downregulation is given for glucose transcriptome relative to ribose transcriptome
  3. bX ≠ G ≈ R designates the group of genes that have distinct expression in xylose transcriptome in comparison with glucose and ribose transcriptomes, where the last two have relatively similar expression; up- and downregulation is given for xylose transcriptome relative to glucose and ribose transcriptome; G ≠ R ≠ X – the group of genes that have distinct expression levels in all three transcriptomes