Genes, upregulated on glucose and xylose
|
LACOL_0264
|
Fructokinase gmuE
|
1.46
|
−0.4
|
1.86
|
−88
|
ATTAAAACGGTTACAA
| |
LACOL_0353
|
PTS system mannose-specific EIIAB component manX
|
2.47
|
0.49
|
1.98
|
−97
|
ATGAAAGCGTATTCAA
|
manXYZ
|
LACOL_0639
|
Mannose-6-phosphate isomerase pmi
|
1.54
|
−0.52
|
2.06
|
−58
|
TAGGAAGGGCTTACAT
| |
LACOL_0566
|
Gluconokinase gntK
|
2.03
|
0.84
|
1.19
|
−112
|
ATGGAATCGGTTGCTA
|
LACOL_0567 d
|
−95
|
TTGTAACCGATTTCCA
|
LACOL_1326
|
Gluconate permease gntP2
|
1.81
|
−0.21
|
2.02
|
−155
|
TTGTTAACGGTTACAA
|
LACOL_1325 d
|
LACOL_0266
|
Putative xylose-proton symporter xylP2
|
1.6
|
0.78
|
0.82
|
−130
|
TTGCAAGCGTTTACAA
|
LACOL_0265 d
|
LACOL_0399
|
Aldose 1-epimerase xylM
|
1.09
|
−0.39
|
1.47
|
−144
|
ATACAAGCGCTTTCAT
|
xylR
d
|
−46
|
ATTTAATCGCTTACAT
|
LACOL_0400
|
Transcriptional xylose repressor xylR
|
1.19
|
−0.43
|
1.62
|
−239
|
ATGTAAGCGATTAAAT
|
xylM
d
|
−141
|
ATGAAAGCGCTTGTAT
|
LACOL_0401
|
Xylose isomerase xylA
|
2.33
|
−2.3
|
4.63
|
−90
|
GTGAAAGGGGTTGCAA
|
xylA-xylB
|
−68
|
ATGTAAGCGTTATACT
|
LACOL_1587
|
D-xylose-proton symporter xylT
|
3.23
|
−0.9
|
4.13
|
−139
|
TTGGCAGCGGTTTCAT
| |
−72
|
CTGAAAGCGGTTACGC
|
LACOL_0614
|
Phosphocarrier protein Hpr ptsH
|
1.61
|
0.26
|
1.36
|
−126
|
AATAAAACGTTTACAT
|
ptsH-ptsI
|
LACOL_1153
|
Pyruvate dehydrogenase E1 component alpha subunit pdhA
|
2.54
|
0.26
|
2.28
|
−60
|
AATAAAGCGCTTACAT
|
pdhA-pdhB-pdhC-pdhD
|
LACOL_0222
|
1,3-propanediol dehydrogenase dhaT
|
3.81
|
2.11
|
1.7
|
−41
|
TTGTAATCGCTTTAAT
|
LACOL_0223 d
|
Genes, upregulated on ribose
|
LACOL_0444
|
D-ribose pyranase rbsD1
|
−2.32
|
0.55
|
−2.87
|
−77
|
TTGAAAGCGGTTACTA
|
rbsD1-rbsA-rbsC-rbsB
|
LACOL_0616
|
Putative (deoxy)ribose permease deoP
|
−4.59
|
0.04
|
−4.63
|
−50
|
TTGTAAGCGGATTATT
| |
LACOL_0617
|
D-ribose pyranase rbsD2
|
−4.57
|
0.34
|
−4.9
|
−108
|
TTGCAATCGTTTCCAA
| |
LACOL_0618
|
Ribokinase rbsK2
|
−5.55
|
0.59
|
−6.13
|
−258
|
TTGGAAACGATTGCAA
|
rbsK2-rpiA2
|
Genes, upregulated on glucose
|
LACOL_0233
|
Glucose-6-phosphate dehydrogenase zwf
|
1.37
|
1.19
|
0.18
|
−107
|
GTGTAACCGGTTTATT
| |
LACOL_0255
|
Aldehyde-alcohol dehydrogenase adhE
|
5.69
|
6.37
|
−0.68
|
−220
|
ATGTAAGCGATTACAA
| |
LACOL_0923
|
Sugar (maltose):cation symporter
|
7.66
|
7.46
|
0.2
|
−53
|
CTGTAATCGGTTACAT
|
LACOL_0923-mdxK-pgmB
|
Other genes (mostly equally expressed)
|
LACOL_0188
|
CRISPR-associated protein cas9
|
0.56
|
−0.52
|
1.09
|
−67
|
ATGAAAGCGTTTAACC
| |
LACOL_0275
|
L-arabinose isomerase araA
|
0.81
|
−0.19
|
1
|
−79
|
TTGTAAGCGATTAACA
| |
LACOL_1004
|
N-acetylmannosamine-6-phosphate epimerase nanE
|
0.48
|
−0.13
|
0.61
|
−263
|
ATGTAAACGTTTTCTT
|
nanE-nanA-nanR, nanK
d
|
LACOL_1005
|
N-acetylmannosamine kinase nanK
|
0.6
|
−0.55
|
1.14
|
−36
|
AAGAAAACGTTTACAT
|
nanE
d
|
LACOL_0104
|
PTS system sugar-specific enzyme IIA component
|
0.4
|
0.3
|
0.1
|
−63
|
TTGTAAGCCTTTGCAA
|
LACOL_0104-LACOL_0106
|
LACOL_0218
|
Galactokinase galK
|
0.21
|
0.33
|
−0.12
|
−133
|
AATTAACCGTTTTCAT
|
galK-galT-galR
|
LACOL_0521
|
Beta-galactosidase large subunit lacL
|
0.39
|
−0.57
|
0.97
|
−63
|
TTGAAAGCGCTTTAAC
|
lacL-lacM
|
LACOL_1707
|
Beta-galactosidase lacZ
|
0.06
|
0.58
|
−0.52
|
−38
|
AAGAAAGCGCTTTCTA
|
LacZ-LACOL_1706-LACOL_1705
|