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Table 2 Motifs for binding sites searching

From: Disrupted cooperation between transcription factors across diverse cancer types

Motif Matrix_acca IRF2 IRF5 IRF6 IRF8
5′-RAAANTGAAAN-3′ M00972 ✔ ✔   ✔
5′-BNCRSTTTCANTTYY-3′ M00772 ✔ ✔ ✔ ✔
5′-GAAAAGYGAAASY-3′ M00063 ✔    
5′-RAARTGAAACTG-3′ M00699     ✔
  1. aMatrix_acc means the accession number of matrix in TRANSFAC
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BMC Genomics

ISSN: 1471-2164

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