Skip to main content

Table 4 Chi-square test for Lundehund dogs and seventeen different breeds. Other breeds are used as controls for Lundehund-specific LS. The test results are shown for the four candidate SNPs chosen from filtering analysis for mutations predicted to have high or moderate effects

From: Variant detection and runs of homozygosity in next generation sequencing data elucidate the genetic background of Lundehund syndrome

CFA

Gene

Polymorphism

Chi-Square genotype (Probability)

Chi-Square allele (Probability)

Chi-Square trend (Probability)

34

LEPREL1

LEPREL1:g.139212C>G

132.735 (P = 1.503E-29)

238.686 (P = 7.607E-54)

130.861 (P = 2.655E-30)

5

CEP164

CEP164:g.57380G>T

83.884 (P = 6.092E-19)

120.165 (P = 5.822E-28)

83.716 (P = 5.712E-20)

14

COL28A1

COL28A1:g.159951T>A

101.034 (P = 1.150E-22)

116.566 (P = 3.573E-27)

79.531 (P = 4.748E-19)

27

KRT3

KRT3:g.2584C>T

3.379 (P = 0.184)

2.483 (P = 0.115)

2.146 (P = 0.173)