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Table 4 Chi-square test for Lundehund dogs and seventeen different breeds. Other breeds are used as controls for Lundehund-specific LS. The test results are shown for the four candidate SNPs chosen from filtering analysis for mutations predicted to have high or moderate effects

From: Variant detection and runs of homozygosity in next generation sequencing data elucidate the genetic background of Lundehund syndrome

CFA Gene Polymorphism Chi-Square genotype (Probability) Chi-Square allele (Probability) Chi-Square trend (Probability)
34 LEPREL1 LEPREL1:g.139212C>G 132.735 (P = 1.503E-29) 238.686 (P = 7.607E-54) 130.861 (P = 2.655E-30)
5 CEP164 CEP164:g.57380G>T 83.884 (P = 6.092E-19) 120.165 (P = 5.822E-28) 83.716 (P = 5.712E-20)
14 COL28A1 COL28A1:g.159951T>A 101.034 (P = 1.150E-22) 116.566 (P = 3.573E-27) 79.531 (P = 4.748E-19)
27 KRT3 KRT3:g.2584C>T 3.379 (P = 0.184) 2.483 (P = 0.115) 2.146 (P = 0.173)