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Table 3 Locations of genes with GGDEF/GGEEF domains in the P. priestleyi BC1401 draft genome and similarity of the gene product to WspR based upon modelling of protein structure in Phyre2 [45]

From: Genomic mechanisms for cold tolerance and production of exopolysaccharides in the Arctic cyanobacterium Phormidesmis priestleyi BC1401

BC1401 gene Gene Product Name Length (aa) Confidence %ID Alignment length
Ga0079976_102110 Response regulator receiver modulated diguanylate cyclasea 331 100 % 38 % 93 %
Ga0079976_106215 Response regulator receiver modulated diguanylate cyclasea 312 100 % 39 % 97 %
Ga0079976_102431 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase 595 100 % 27 % 50 %
Ga0079976_101496 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase 613 100 % 27 % 51 %
Ga0079976_10199 PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein 725 100 % 29 % 23 %
Ga0079976_10297 Diguanylate cyclase (GGDEF) domain-containing protein 530 100 % 34 % 21 %
Ga0079976_101051 PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein 732 100 % 34 % 22 %
  1. Putative wspR homologues are marked with a