Table 1 Number of DE genes from sex chromosomes detected by each method in the HapMap-CEU data set at FDR-ajusted p-value of 0.05
From: ABSSeq: a new RNA-Seq analysis method based on modelling absolute expression differences
| Method | Sex/Total | Sex in Top 10 |
|---|---|---|
| ABSSeq | 7/7 | 7 |
| DESeq | 7/25 | 5 |
| edgeR | 7/20 | 7 |
| DESeq2 | 7/10 | 7 |
| Voom | 7/7 | 7 |
| baySeq | 9/27 | 7 |
| EBSeq | 2/38 | 2 |