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Table 1 Statistics for the match and mismatch between major and canonical (or principal) isoforms

From: ISOexpresso: a web-based platform for isoform-level expression analysis in human cancer

  No. of genes (n=26541)  
Cancer types No. of samples mTPM >0 Percent increase b
   mTPM=0     
    Matched a Not matched  
     kCanon nokCanon  
KIRP_normal 32 7359 12721 (2438) c 3972 (1113) 2489 (1594)  
KIRP_tumor 290 8089 11544 (2474) 4580 (1266) 2328 (1475) 15.3 %
COAD_normal 41 7751 12562 (2543) 3919 (1189) 2309 (1597)  
COAD_tumor 460 8234 11805 (2442) 4291 (1298) 2211 (1443) 9.5 %
THCA_normal 59 7647 12389 (2363) 4019 (1071) 2486 (1489)  
THCA_tumor 505 7964 11838 (2405) 4387 (1166) 2352 (1504) 9.2 %
PRAD_normal 52 7429 12546 (2493) 4104 (1077) 2462 (1565)  
PRAD_tumor 497 7645 12042 (2549) 4445 (1228) 2409 (1523) 8.3 %
READ_normal 10 7402 12743 (2451) 3954 (1152) 2442 (1686)  
READ_tumor 165 8140 11879 (2499) 4283 (1277) 2239 (1459) 8.3 %
UCEC_normal 35 7715 11641 (2284) 4763 (1191) 2422 (1518)  
UCEC_tumor 545 7746 11226 (2515) 5152 (1323) 2417 (1551) 8.2 %
BLCA_normal 19 7986 11820 (2373) 4433 (1206) 2302 (1577)  
BLCA_tumor 408 8057 11381 (2541) 4791 (1412) 2312 (1593) 8.1 %
KIRC_normal 72 7411 12712 (2423) 3941 (1098) 2477 (1604)  
KIRC_tumor 533 7623 12166 (2387) 4240 (1174) 2512 (1627) 7.6 %
LUSC_normal 51 7251 12681 (2415) 4055 (1058) 2554 (1702)  
LUSC_tumor 502 7350 12404 (2563) 4300 (1187) 2487 (1670) 6 %
STAD_normal 35 7866 12901 (2559) 3443 (1151) 2331 (1663)  
STAD_tumor 415 7374 13017 (2520) 3608 (1196) 2542 (1723) 4.8 %
HNSC_normal 44 7831 12622 (3040) 3844 (1225) 2244 (1678)  
HNSC_tumor 520 7881 12383 (2788) 3994 (1193) 2283 (1626) 3.9 %
LUAD_normal 59 7802 12228 (2185) 4146 (1069) 2365 (1533)  
LUAD_tumor 516 7547 12263 (2401) 4274 (1163) 2457 (1622) 3.1 %
KICH_normal 25 7166 12787 (2420) 4020 (1098) 2568 (1599)  
KICH_tumor 66 8362 11776 (2773) 4146 (1368) 2257 (1529) 3.1 %
LIHC_normal 50 9136 10714 (3129) 4786 (1963) 1905 (1504)  
LIHC_tumor 370 8787 10782 (2860) 4907 (1769) 2065 (1534) 2.5 %
BRCA_normal 114 7396 12504 (2193) 4107 (1025) 2534 (1559)  
BRCA_tumor 1097 7711 12224 (2378) 4190 (1162) 2416 (1575) 2 %
ESCA_normal 11 7544 12824 (2847) 3701 (1306) 2472 (1772)  
ESCA_tumor 184 7136 13037 (2639) 3754 (1201) 2614 (1739) 1.4 %
  1. aThe number of genes whose major isoform is matched to at least one of UniProt-based and UCSC-based canonical and APPRIS principal isoforms
  2. bPercent increase in the number of genes corresponding to “kCanon” when condition is changed from normal to tumor
  3. cThe numbers in parentheses indicate the number of genes whose expression level (mTPM) is greater than or equal to 1
  4. mTPM = median transcripts per million
  5. kCanon = the genes whose canonical or principal isoform is known
  6. nokCanon = the genes whose canonical or principal isoform is not known