Table 1 Statistics for the match and mismatch between major and canonical (or principal) isoforms
From: ISOexpresso: a web-based platform for isoform-level expression analysis in human cancer
No. of genes (n=26541) | ||||||
|---|---|---|---|---|---|---|
Cancer types | No. of samples | mTPM >0 | Percent increase b | |||
mTPM=0 | ||||||
Matched a | Not matched | |||||
kCanon | nokCanon | |||||
KIRP_normal | 32 | 7359 | 12721 (2438) c | 3972 (1113) | 2489 (1594) | |
KIRP_tumor | 290 | 8089 | 11544 (2474) | 4580 (1266) | 2328 (1475) | 15.3 % |
COAD_normal | 41 | 7751 | 12562 (2543) | 3919 (1189) | 2309 (1597) | |
COAD_tumor | 460 | 8234 | 11805 (2442) | 4291 (1298) | 2211 (1443) | 9.5 % |
THCA_normal | 59 | 7647 | 12389 (2363) | 4019 (1071) | 2486 (1489) | |
THCA_tumor | 505 | 7964 | 11838 (2405) | 4387 (1166) | 2352 (1504) | 9.2 % |
PRAD_normal | 52 | 7429 | 12546 (2493) | 4104 (1077) | 2462 (1565) | |
PRAD_tumor | 497 | 7645 | 12042 (2549) | 4445 (1228) | 2409 (1523) | 8.3 % |
READ_normal | 10 | 7402 | 12743 (2451) | 3954 (1152) | 2442 (1686) | |
READ_tumor | 165 | 8140 | 11879 (2499) | 4283 (1277) | 2239 (1459) | 8.3 % |
UCEC_normal | 35 | 7715 | 11641 (2284) | 4763 (1191) | 2422 (1518) | |
UCEC_tumor | 545 | 7746 | 11226 (2515) | 5152 (1323) | 2417 (1551) | 8.2 % |
BLCA_normal | 19 | 7986 | 11820 (2373) | 4433 (1206) | 2302 (1577) | |
BLCA_tumor | 408 | 8057 | 11381 (2541) | 4791 (1412) | 2312 (1593) | 8.1 % |
KIRC_normal | 72 | 7411 | 12712 (2423) | 3941 (1098) | 2477 (1604) | |
KIRC_tumor | 533 | 7623 | 12166 (2387) | 4240 (1174) | 2512 (1627) | 7.6 % |
LUSC_normal | 51 | 7251 | 12681 (2415) | 4055 (1058) | 2554 (1702) | |
LUSC_tumor | 502 | 7350 | 12404 (2563) | 4300 (1187) | 2487 (1670) | 6 % |
STAD_normal | 35 | 7866 | 12901 (2559) | 3443 (1151) | 2331 (1663) | |
STAD_tumor | 415 | 7374 | 13017 (2520) | 3608 (1196) | 2542 (1723) | 4.8 % |
HNSC_normal | 44 | 7831 | 12622 (3040) | 3844 (1225) | 2244 (1678) | |
HNSC_tumor | 520 | 7881 | 12383 (2788) | 3994 (1193) | 2283 (1626) | 3.9 % |
LUAD_normal | 59 | 7802 | 12228 (2185) | 4146 (1069) | 2365 (1533) | |
LUAD_tumor | 516 | 7547 | 12263 (2401) | 4274 (1163) | 2457 (1622) | 3.1 % |
KICH_normal | 25 | 7166 | 12787 (2420) | 4020 (1098) | 2568 (1599) | |
KICH_tumor | 66 | 8362 | 11776 (2773) | 4146 (1368) | 2257 (1529) | 3.1 % |
LIHC_normal | 50 | 9136 | 10714 (3129) | 4786 (1963) | 1905 (1504) | |
LIHC_tumor | 370 | 8787 | 10782 (2860) | 4907 (1769) | 2065 (1534) | 2.5 % |
BRCA_normal | 114 | 7396 | 12504 (2193) | 4107 (1025) | 2534 (1559) | |
BRCA_tumor | 1097 | 7711 | 12224 (2378) | 4190 (1162) | 2416 (1575) | 2 % |
ESCA_normal | 11 | 7544 | 12824 (2847) | 3701 (1306) | 2472 (1772) | |
ESCA_tumor | 184 | 7136 | 13037 (2639) | 3754 (1201) | 2614 (1739) | 1.4 % |