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Fig. 7 | BMC Genomics

Fig. 7

From: A transcriptional blueprint for a spiral-cleaving embryo

Fig. 7

Shared gene expression between stages. A gene is considered expressed if the FPKM > 1. a The similarity of expressed genes between two groups, 2–8 h post fertilization (2-8 h) and 10 to 14 h are shown. 7107 genes are shared by all four stages between 2 and 8 h, while 9574 genes are shared by the later three stages. b Differentially expressed genes between stages. A gene is considered differentially expressed if the FDR < 0.001. The most differentially expressed genes were found between 8 and 10 h, with 2519 differentially expressed genes. We used a “green-yellow-red” color scheme to represent low, median, and high numbers of differentially expressed genes, respectively (see Results for more details). Lists for individual genes that are significantly down-regulated and up-regulated between each adjacent stage, including expression profiles and annotations, are listed in Additional file 10: Tables S6, Additional file 11: Tables S7, respectively

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