Skip to main content

Table 1 Selective sweeps. FST and heterozygosity estimations in sliding windows were used to identify differentiated loci undergoing selection in either northern or southern populations of Atlantic salmon in Norway. Genes carrying differentiated missense mutations are shown in bold

From: Atlantic salmon populations reveal adaptive divergence of immune related genes - a duplicated genome under selection

Chromosome Chromosomal region Sweep length (bp) Genes in selective sweeps
5 22,475,000 – 22,800,000 325,000 tnmd, elf1, nkrf , sept6, sowahc , rpl39, upf3b, nkap , zbtb33 , atp1b4, lamp2, cul4b, mcts1, c1galt1c1, clic2
10 76,250,000 – 76,450,000 200,000 sept7, anln , prmt7, coq9, polr2c, dgat1, nedd4, adat1, spire2
11 19,225,000 – 19,300,000 75,000 numa1
13 78,325,000 – 78,425,000 100,000 trpc2 , rrm1 , slc6a7, rb1 , lpar6
13 81,025,000 – 81,150,000 125,000 eda2r, ar, ophn1
14 64,700,000 – 65,275,000 575,000 pard6g, bloc1s4, nutf2, adnp2 , txnl4a, pqlc1, kcng2, ctdp1, adck5, cpsf1 , parp10 , st3gal1, khdrbs3
15 46,925,000 – 47,200,000 275,000 mdga1
21 24,850,000 – 25,075,000 225,000 trim13, rnaseh2b , nr0b1, il1rapl1
24 34,225,000 – 34,525,000 300,000 edil3
25 47,075,000 – 47,225,000 150,000 stxbp5l, gtf2e1, mx1-1 , mx1-2 , mx2-1 , smcp-1a, mx1-3
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us