Skip to main content

Table 1 SNPs rediscovered in S4a and S4b

From: Is genotyping of single isolates sufficient for population structure analysis of Pseudomonas aeruginosa in cystic fibrosis airways?

       

Total no. of reads on position

% of reads with the mutation

Position

Ref

Qry

Mutation (aa)

Mutation (bp)

PA no.

Gene name

S4a

S4b

S4a

S4b

5671

C

T

S466F

C1397T

PA0004

gyrB

15

13

7

100

2453983

G

A

G106D

G317A

PA2231

pslA

17

17

24

0

2640133

A

G

F43L

T127C

PA2386

pvdA

15

12

0

100

2926243

C

G

E64Q

G190C

PA2586

gacA

5

11

0

100

3970113

G

A

G172A

G58S

PA3545

algG

15

11

87

0

3971271

G

A

G1330A

G444S

PA3545

algG

19

13

0

100

5551035

A

C

V216G

T647G

PA4946

mutL

11

8

9

100

5677066

T

C

T265A

A793G

PA5040

pilQ

12

17

17

100

6028514

G

A

E325K

G973A

PA5361

phoR

5

12

100

0

  1. Including examples of mutations not found in S4a but found in S4b (Ref reference base, Qry query base, PA no. PAO1 gene number, aa amino acid change, bp specific base pair substitution). NOTE: all mutation types are missense mutations
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us