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Table 1 Gene evidence sources for Nasonia vitripennis OGS2. Mapping results of ESTs and RNA-Seq reads with >95 % coverage of length >100 bp to the assembled N. vitripennis genome (Nvit_1.0) using three mapping software and six parameters. An average of 2.5 % of reads are multiply mapped by GSNAP, measured over 8 RNA-Seq libraries. Number of constructed transcript assemblies matching the final gene model by 10 % and 95 % sequence overlap is also indicated

From: OGS2: genome re-annotation of the jewel wasp Nasonia vitripennis

  RNA assemblies Mapped to genome 10 % of gene 95 % of gene
Cufflink 10 46,259 40,853 12,386 4902
Cufflink 08 71,761 56,640 14,317 5287
Velvet p2 121,672 95,360 16,190 7706
Velvet p3 151,038 116,591 17,556 7851
Velvet p4 242,217 122,194 16,406 6874
PASA 69,805 69,805 13,099 6253
All genes    21,601 10,426
Alt. Transcripts 7,837    
RNA read counts EST paired 124,188   
EST single 51,665   
RNA-Seq single 187,823,326