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Table 1 Gene evidence sources for Nasonia vitripennis OGS2. Mapping results of ESTs and RNA-Seq reads with >95 % coverage of length >100 bp to the assembled N. vitripennis genome (Nvit_1.0) using three mapping software and six parameters. An average of 2.5 % of reads are multiply mapped by GSNAP, measured over 8 RNA-Seq libraries. Number of constructed transcript assemblies matching the final gene model by 10 % and 95 % sequence overlap is also indicated

From: OGS2: genome re-annotation of the jewel wasp Nasonia vitripennis

 

RNA assemblies

Mapped to genome

10 % of gene

95 % of gene

Cufflink 10

46,259

40,853

12,386

4902

Cufflink 08

71,761

56,640

14,317

5287

Velvet p2

121,672

95,360

16,190

7706

Velvet p3

151,038

116,591

17,556

7851

Velvet p4

242,217

122,194

16,406

6874

PASA

69,805

69,805

13,099

6253

All genes

  

21,601

10,426

Alt. Transcripts

7,837

   

RNA read counts

EST paired

124,188

  

EST single

51,665

  

RNA-Seq single

187,823,326

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