Table 2 Summary of the improved Official Gene Set (OGS2) comparing all gene constructions to good constructions having expression and/or homology evidence and to the previous OGS1.2 gene models. Percentages are of the total number of genes for the set
From: OGS2: genome re-annotation of the jewel wasp Nasonia vitripennis
Summary Statistics | OGS2 All Models | OGS2 Good Models | OGS1.2 Final Models |
|---|---|---|---|
Genes | 36,327 | 24,388 | 18,850 |
Protein coding genes | 25,725 (71 %) | 24,388 | 15,566a |
Non-coding genes | 3,997 (11 %) | 0 | 0 |
Transposon protein genes | 6,605 (20 %) | 385a | 2,935a |
Single transcript genes | 32,079 (88 %) | 20,243 (83 %) | 18,759 (99.5 %) |
Genes assigned to orthologb | 15,176 (42 %) | 15,173 (62 %) | -- |
Transcripts | 44,164 | 32,101 | 18,941 |
Alternative transcripts | 7837 | 7712 | 91 |
Mean isoforms per gene | 1.22 | 1.32 | 1 |
Complete proteins | 41,256 (93 %) | 30,521 (95 %) | 18,941 (100 %) |
Median transcript length | 1571 bp | 1603 bp | 1176 bp |
Median CDS length | 777 bp | 981 bp | 1032 bp |
Transcripts with UTR | 41,313 (94 %) | 30,512 (95 %) | 5264 (28 %) |