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Table 2 Number of reads for supporting Xbp1 26 nt spliced regions reported by RSR and other tools

From: Read-Split-Run: an improved bioinformatics pipeline for identification of genome-wide non-canonical spliced regions using RNA-Seq data

  500 nM Thapsigargin (Tg) 1 mM Dithiothreitol (Dtt)
Software Het (Ire1α +/−) KO (Ire1α −/−) Het (Ire1α +/−) KO (Ire1α −/−)
Read-Split-Run (RSR) 21 0 173 0
TopHat 23 86 59 289
BWA 0 0 67 0
Bowtie2 0 0 171 0
STAR 0 0 0 0
Alt Event Finder 0 0 0 0