Skip to main content

Table 2 Number of reads for supporting Xbp1 26 nt spliced regions reported by RSR and other tools

From: Read-Split-Run: an improved bioinformatics pipeline for identification of genome-wide non-canonical spliced regions using RNA-Seq data

 

500 nM Thapsigargin (Tg)

1 mM Dithiothreitol (Dtt)

Software

Het (Ire1α +/−)

KO (Ire1α −/−)

Het (Ire1α +/−)

KO (Ire1α −/−)

Read-Split-Run (RSR)

21

0

173

0

TopHat

23

86

59

289

BWA

0

0

67

0

Bowtie2

0

0

171

0

STAR

0

0

0

0

Alt Event Finder

0

0

0

0