Table 3 The overlapping spliced junctions identified by TopHat and our RSR
mouse-Het | mouse-KO | mouse-Het | mouse-KO | human | |
|---|---|---|---|---|---|
Software | 500 nM Thapsigargin (Tg) | 1 mM Dithiothreitol (Dtt) | ENCODE | ||
TopHat | 956 | 923 | 8897 | 7847 | 237,155 |
RSR | 144 | 183 | 6727 | 6343 | 32,597 |
Common | 38 | 41 | 2398 | 2128 | 314 |
Common/TopHat | 3.97 % | 4.44 % | 26.95 % | 27.12 % | 0.13 % |
Common/RSR | 26.39 % | 22.40 % | 35.65 % | 33.55 % | 0.96 % |