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Table 2 Gene Ontology and KEGG pathway annotation of DEGs between two groups

From: Whole blood transcriptional profiling comparison between different milk yield of Chinese Holstein cows using RNA-seq data

Category

GO ID

GO term

P value

No.of DEGs

DEGs

BP

GO:0006952

defense response

0.000001

15

KYNU, CARD9, OLR1, RSAD2, CCL5, TLR7, TNFRSF4, CXCL10, MIF, CCR3, HRH4, PLA2G7, THBS1, MX2, RAB27A

BP

GO:0009611

response to wounding

0.000008

13

NRP1, OLR1, CCL5, TLR7, TPM1, TNFRSF4, CXCL10, MIF, CCR3, HRH4, PLA2G7, THBS1, RAB27A

BP

GO:0006955

immune response

0.000024

14

KYNU, CARD9, OLR1, IFITM3, RSAD2, CCL5, TLR7, TNFRSF4, CXCL10, MIF, IGHE, TREM2, THBS1, RAB27A

BP

GO:0006954

inflammatory response

0.000027

10

OLR1, CCR3, HRH4, PLA2G7, CCL5, THBS1, TNFRSF4, TLR7, MIF, CXCL10

BP

GO:0006690

icosanoid metabolic process

0.001543

4

GGT5, CYP2J2, ALOX12, MIF

BP

GO:0033559

unsaturated fatty acid metabolic process

0.001954

4

GGT5, CYP2J2, ALOX12, MIF

BP

GO:0009615

response to virus

0.001958

5

CARD9, RSAD2, CCL5, MX2, TLR7

BP

GO:0006631

fatty acid metabolic process

0.002770

6

LPL, GGT5, CYP2J2, CPT1A, ALOX12, MIF

BP

GO:0032940

secretion by cell

0.003353

6

STX1A, LMF1, USE1, CCL5, RAB27A, CXCL10

BP

GO:0051607

defense response to virus

0.004209

3

CARD9, RSAD2, TLR7

BP

GO:0006633

fatty acid biosynthetic process

0.006735

4

LPL, GGT5, ALOX12, MIF

BP

GO:0046394

carboxylic acid biosynthetic process

0.006891

5

LPL, GGT5, KYNU, ALOX12, MIF

BP

GO:0016053

organic acid biosynthetic process

0.006891

5

LPL, GGT5, KYNU, ALOX12, MIF

BP

GO:0046456

icosanoid biosynthetic process

0.009951

3

GGT5, ALOX12, MIF

BP

GO:0006636

unsaturated fatty acid biosynthetic process

0.011894

3

GGT5, ALOX12, MIF

BP

GO:0008015

blood circulation

0.012860

5

TCAP, OLR1, MYOF, TPM1, CXCL10

BP

GO:0003013

circulatory system process

0.012860

5

TCAP, OLR1, MYOF, TPM1, CXCL10

BP

GO:0051270

regulation of cell motion

0.014554

5

COL18A1, NRP1, THBS1, TPM1, CXCL10

BP

GO:0046903

secretion

0.015412

6

STX1A, LMF1, USE1, CCL5, RAB27A, CXCL10

BP

GO:0016192

vesicle-mediated transport

0.021730

8

STX1A, RABEP2, HIP1R, USE1, TRAPPC5, CCL5, THBS1, RAB27A

BP

GO:0002252

immune effector process

0.027651

4

CARD9, RSAD2, TLR7, RAB27A

BP

GO:0002684

positive regulation of immune system process

0.028807

5

CARD9, IL13RA1, THBS1, TNFRSF4, TLR7

BP

GO:0002544

chronic inflammatory response

0.028923

2

CCL5, THBS1

BP

GO:0045087

innate immune response

0.029812

4

KYNU, TLR7, RAB27A, MIF

BP

GO:0051240

positive regulation of multicellular organismal process

0.031168

5

CARD9, CCL5, THBS1, TPM1, TLR7

BP

GO:0045785

positive regulation of cell adhesion

0.034610

3

THBS1, TPM1, ALOX12

BP

GO:0006968

cellular defense response

0.035673

3

CCR3, CCL5, TNFRSF4

BP

GO:0033273

response to vitamin

0.041171

3

ALPL, KYNU, PMF1

BP

GO:0002694

regulation of leukocyte activation

0.047354

4

IL13RA1, THBS1, TNFRSF4, MIF

BP

GO:0031349

positive regulation of defense response

0.049365

3

CARD9, CCL5, TLR7

BP

GO:0030334

regulation of cell migration

0.049479

4

COL18A1, THBS1, TPM1, CXCL10

BP

GO:0000267

cell fraction

0.002965

13

STX1A, KYNU, CYB5R2, CYP2J2, OLR1, HIP1R, SLC6A4, CCL5, CPT1A, PYGM, HRH4, ABCC4, CA4

CC

GO:0005886

plasma membrane

0.009603

27

ALPL, STEAP4, NRP1, IFITM3, SLC6A4, SLC16A12, RSAD2, TNFRSF4, TPM1, HRH4, TGM3, THBS1, IL13RA1, MYOF, RAB27A, LPL, STX1A, OLR1, ZP3, FADD, GGT5, TARP, CCR3, CA4, ABCC4, TREM2, ALOX12

CC

GO:0044433

cytoplasmic vesicle part

0.010180

5

STX1A, HIP1R, ABCC4, THBS1, RAB27A

CC

GO:0030659

cytoplasmic vesicle membrane

0.025142

4

STX1A, HIP1R, ABCC4, RAB27A

CC

GO:0044421

extracellular region part

0.027958

10

COL18A1, LPL, OGN, ZP3, PLA2G7, PMF1, CCL5, THBS1, MIF, CXCL10

CC

GO:0005624

membrane fraction

0.028767

9

STX1A, CYP2J2, OLR1, HIP1R, HRH4, SLC6A4, ABCC4, CA4, CPT1A

CC

GO:0012506

vesicle membrane

0.031088

4

STX1A, HIP1R, ABCC4, RAB27A

CC

GO:0005615

extracellular space

0.034524

8

COL18A1, LPL, PLA2G7, PMF1, CCL5, THBS1, MIF, CXCL10

CC

GO:0005626

insoluble fraction

0.034688

9

STX1A, CYP2J2, OLR1, HIP1R, HRH4, SLC6A4, ABCC4, CA4, CPT1A

CC

GO:0030141

secretory granule

0.048228

4

STX1A, ABCC4, THBS1, RAB27A

MF

GO:0019955

cytokine binding

0.013930

4

CCR3, IL13RA1, THBS1, TNFRSF4

MF

GO:0008144

drug binding

0.028489

3

PYGM, SLC6A4, TLR7

KEGG PATHWAY

hsa04620

Toll-like receptor signaling pathway

0.029157

4

FADD, CCL5, TLR7, CXCL10