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Table 3 Cell lines annotation of breast carcinoma

From: Comprehensive comparison of molecular portraits between cell lines and tumors in breast cancer

Cell line name Gender Hist subtype1 Source ER PR Her2 PAM50 mRNA Our classification
AU565 F   ATCC - - + Her2amp Her2amp
BT-20 F ductal_carcinoma ATCC - - - Basal-like Basal-like
BT-474 F ductal_carcinoma ATCC + + + Luminal B Luminal B
BT-483 F ductal_carcinoma ATCC + + - Luminal A Luminal A
BT-549 F ductal_carcinoma ATCC - - - Basal-like Basal-like
CAL-120 F   DSMZ - - - Basal-like Basal-like
CAL-148 F ductal_carcinoma DSMZ - - - Luminal B Basal-like
CAL-51 F   DSMZ - - - Basal-like Basal-like
CAL-85-1 F   DSMZ - - - Basal-like Basal-like
CAMA-1 F   ATCC + - - Luminal B Luminal A
DU4475 F   ATCC - - - Basal-like Basal-like
EFM-19 F ductal_carcinoma DSMZ + + - Luminal B Luminal A
EFM-192A F   DSMZ + - + Her2amp Luminal B
EVSA-T F   DSMZ + - + NON Luminal B
HCC1143 F ductal_carcinoma ATCC - - - Basal-like Basal-like
HCC1187 F ductal_carcinoma ATCC - - - Basal-like Basal-like
HCC1395 F ductal_carcinoma ATCC - - - Basal-like Basal-like
HCC1419 F ductal_carcinoma ATCC - - + Her2amp Her2amp
HCC1428 F   ATCC + + - Luminal B Luminal A
HCC1500 F ductal_carcinoma ATCC - - - Luminal A Basal-like
HCC1569 F metaplastic_carcinoma ATCC - - + Basal-like Her2amp
HCC1599 F ductal_carcinoma ATCC - - - Basal-like Basal-like
HCC1806 F ductal_carcinoma ATCC - - - Basal-like Basal-like
HCC1937 F ductal_carcinoma ATCC - - - Basal-like Basal-like
HCC1954 F ductal_carcinoma ATCC - - + Her2amp Her2amp
HCC202 F ductal_carcinoma ATCC - - + Her2amp Her2amp
HCC2157 F ductal_carcinoma ATCC - - - Basal-like Basal-like
HCC2218 F ductal_carcinoma ATCC - - + Luminal A Her2amp
HCC38 F ductal_carcinoma ATCC - - - Basal-like Basal-like
HCC70 F ductal_carcinoma ATCC - - - Basal-like Basal-like
HDQ-P1 F ductal_carcinoma DSMZ - - - Basal-like Basal-like
HMC-1-8 F   HSRRB     NON Luminal A
Hs 274.T F   ATCC     Basal-like Luminal B
Hs 281.T F   ATCC     Basal-like Her2amp
Hs 343.T F   ATCC     Basal-like Her2amp
Hs 578 T F ductal_carcinoma ATCC - - - Basal-like Basal-like
Hs 606.T F   ATCC     Luminal A Luminal B
Hs 739.T F   ATCC     Basal-like Basal-like
Hs 742.T F   ATCC     Luminal A Luminal A
JIMT-1 F ductal_carcinoma DSMZ - -   Basal-like Her2amp
KPL-1 F ductal_carcinoma DSMZ     Luminal A Basal-like
MCF7 F   ATCC + + - Luminal A Luminal A
MDA-MB-134-VI F ductal_carcinoma ATCC + -   Luminal A Luminal A
MDA-MB-157 F ductal_carcinoma ATCC - - - Basal-like Basal-like
MDA-MB-175-VII F ductal_carcinoma ATCC + -   Luminal B Luminal A
MDA-MB-231 F   ATCC - -   Basal-like Basal-like
MDA-MB-361 F   ATCC + + + Luminal B Luminal B
MDA-MB-415 F   ATCC + - - Luminal B Luminal A
MDA-MB-436 F   ATCC - - - Basal-like Basal-like
MDA-MB-453 F   ATCC - - - Luminal B Her2amp
MDA-MB-468 F   ATCC - - - Basal-like Basal-like
SK-BR-3 F   ATCC - - + Her2amp Her2amp
T-47D F ductal_carcinoma ATCC + + - Luminal B Luminal A
UACC-812 F ductal_carcinoma ATCC + - + Her2amp Luminal B
UACC-893 F ductal_carcinoma ATCC - - + Her2amp Her2amp
YMB-1 F   HSRRB + - - Luminal B Luminal A
ZR-75-1 F ductal_carcinoma ATCC     Luminal A Her2amp
ZR-75-30 F ductal_carcinoma ATCC + + - Her2amp Luminal A
HCC2185     - - - NON Basal-like
HMEL        NON Basal-like
HCC3153     - - - NON Basal-like
ZR75B     + - - NON Luminal A
600MPE     + - - NON Luminal A
SUM1315MO2     - -   NON Basal-like
SUM149PT     - - - NON Basal-like
SUM159PT     - - - NON Basal-like
SUM225CWN     - - + NON Her2amp
LY2     + - - NON Luminal A