TF familya
| No. PWMs | No. TFBSs (genes) |
---|
Arabidopsis | Brachypodium | Wheat | Barley |
---|
Myb/SANT | 52 | 25 (15) | 14 (8) | 17 (15) | 11 (10) |
AP2 | 49 | 6 (5) | 231 (28) | 90 (44) | 125 (33) |
bHLH | 30 | 39 (26) | 1 (1) | 10 (6) | 17 (14) |
bZIP | 28 | 74 (43) | 8 (6) | 24 (21) | 17 (13) |
WRKY | 27 | 3 (3) | 0 (0) | 2 (2) | 1 (1) |
HB | 26 | 3 (3) | 7 (7) | 0 (0) | 3 (3) |
TCP | 18 | 11 (8) | 34 (17) | 92 (37) | 44 (16) |
GATA | 15 | 1 (1) | 0 (0) | 3 (2) | 0 (0) |
NAC/NAM | 15 | 1 (1) | 0 (0) | 0 (0) | 3 (3) |
SBP | 15 | 8 (8) | 1 (1) | 0 (0) | 3 (3) |
Dof | 14 | 4 (4) | 1 (1) | 5 (5) | 3 (3) |
MADS box | 12 | 469 (61) | 513 (57) | 673 (131) | 251 (52) |
AT hook | 11 | 1 (0) | 18 (14) | 192 (100) | 40 (23) |
C2H2 ZF | 11 | 0 (0) | 3 (3) | 0 (0) | 13 (11) |
CSD | 1 | 374 (57) | 76 (27) | 308 (105) | 115 (40) |
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aThe full names of TF families are given in the “TF family names” tab of Additional file 3
- A brief functional annotation of these TF families is described below: Myb/SANT- Secondary metabolism, cellular morphogenesis, signal transduction in plant growth, abiotic and biotic stress responses, circadian rhythm, and dorsoventrality; AP2- Flower development, cell proliferation, secondary metabolism, abiotic and biotic stress responses, ABA response, and ethylene response; bHLH- Anthocyanin biosynthesis, light response, flower development and abiotic stress; bZIP- Seed-storage gene expression, photomorphogenesis, leaf development, flower development defense response, ABA response, and gibberellin biosynthesis; WRKY- Defense response HB (Homeodomain)- Development (leaf, root, internode, and ovule), stem cell identity, cell differentiation, growth responses, anthocyanin accumulation, and cell death; TCP- Flower development, asymmetry; GATA- Light response; NAC/NAM -Development, pattern formation, and organ separation; SBP- Plant development; Dof- Seed germination, endosperm-specific expression, and carbon metabolism; MADS box- Flower development, fruit development, flowering time, and root development; AT hook- Plant organ size and yield; CSD- Freezing tolerance, embryo development, flowering time, and fruit development; C2H2 ZF- Flower development, flowering time, seed development, and root nodule development