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Table 2 Small proteins encoded in long 5′-UTRsa

From: Genome-wide identification of transcriptional start sites in the haloarchaeon Haloferax volcanii based on differential RNA-Seq (dRNA-Seq)

No

AS

IP

MW

HVO

TSS HVO

gene / FC

1

15

6.7

1705

2055

+

agl15

(prob. low-salt glycan biosyn. flippase)

2

16

5.6

1714

A0265

 

ISH

3

17

5.8

1896

1842

 

HY

4

15

6.5

1922

B0328

+

dppA15 (ABC transport protein)

5

17

6.5

2008

A0121

 

HTH-10 family transcription regulator

6

17

6.5

2008

A0413

 

HTH-10 family transcription regulator

7

21

4.2

2205

2018

+

CHY

8

23

5.6

2365

2990

+

HY

9

19

5.9

2386

A0265

 

ISH

10

23

4.4

2529

A0035A

 

CHY

11

23

5.6

2640

A0165

 

SNF family transport protein

12

23

5.4

2743

A0127

 

tryptophan--tRNA ligase

13

26

5.9

2772

2948

 

pheS

(phenylalanine-tRNA ligase alpha subunit)

14

24

5.9

2966

2432

+

ABC transport protein

15

27

5.9

3206

A0442

+

CcbP family protein

16

31

5.4

3363

B0198

+

ABC transport protein

  1. aProtein lengths (No. amino acids, AS), isoelectric points (IP) molecular masses (MW), gene designations (HVO_NNNN), occurrences of an additional TSS at the normal-sized ORF, and function of the protein of the normal-sized ORF are shown