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Table 1 P1BS motif of PHR1 targeted protein-coding genes and lncRNAs

From: Systematic characterization of novel lncRNAs responding to phosphate starvation in Arabidopsis thaliana

GeneID/Name No. Motif Position of P1BS motifb Motif sequence Cluster IDc
AtPAP10 a 1 -122 GAATATTC 2
PAP1 a 2 -656,-191 GCATATAC,GAATATCC 1
AtACP5 a 1 -288 GAATATCC 1
AtSPX1 a 3 -124,-881,-100 GGATATTC,GAATATTC,GAATATTC 1
SQD1 a 1 -663 GAATATGC 1
AtIPS1 a 2 -763,-729 GCATATTC,GCATATTC 1
SQD2 a 3 -188,-136,-572 GCATATGC,GTATATCC,GAATATTC 2
At4 a 2 -1028,-490 GTATATGC,GCATATTC 1
RNS1 a 1 -188 GTATATAC 1
AtPT1 a 3 -1301,-1283,-200 GGATATTC,GCATATTC,GTATATAC 3
AtPT2 a 3 -394,-388,-1349 GAATATGC,GCATATAC,GAATATAC 1
AT5G53048 1 -142 GTATATTC 1
AT1G21529 1 -81 GAATATCC 1
AT3G57157 2 -1760,-240 GCATATGC,GAATATCC 2
AT5G06865 2 -1673,-1199 GAATATTC,GTATATTC 2
AT5G01595 1 -1988 GCATATTC 2
XLOC_026999 3 -372,-139,-128 GCATATTC,GCATATTC,GAATATTC 1
XLOC_001691 3 -1391 GTATATAC 1
XLOC_013732 3 -39,-299,-150 GCATATTC,GAATATAC,GAATATTC 1
XLOC_030250 1 -69 GAATATTC 1
XLOC_025622 2 -243,-273 GTATATCC,GAATATAC 1
XLOC_004968 1 -183 GAATATGC 1
XLOC_032181 4 -427,-108,-1483,-79 GGATATCC,GGATATGC,GAATATCC,GGATATTC 2
XLOC_006489 2 -1453,-191 GCATATGC,GCATATTC 2
XLOC_010338 2 -1706,-488 GCATATCC,GTATATCC 2
XLOC_013570 1 -1796 GAATATTC 2
XLOC_005614 2 -588,-113 GCATATCC,GAATATTC 2
XLOC_013661 1 -204 GTATATTC 2
XLOC_014746 1 -62 GAATATGC 2
XLOC_015182 1 -78 GAATATCC 2
  1. Note:
  2. aGene names listed in italics are Pi starvation induced protein-coding marker genes
  3. bFor protein-coding genes, the position is given for the most 5′-upstream nucleotide relative to the first ATG in the transcribed region. For lncRNAs, the position refers to the most 5′-upstream nucleotide relative to first nucleotide of transcripts
  4. cThis table only lists targeted lncRNAs in cluster 1 and 2. Full table of PHR1 targeted genes and lncRNAs are listed in Additional file 7