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Table 2 Correlation between miR399 and potential target genes

From: Systematic characterization of novel lncRNAs responding to phosphate starvation in Arabidopsis thaliana

miRNA Target Function description of targeta PCCb Target scorec Cluster IDd
miR399a AtPT1 Inorganic phosphate transporter 1–1 -0.72 5 3
miR399a SMXL5 Clp amino terminal domain-containing protein -0.72 5 1
miR399a ECT2 Physically interacts with CIPK1. -0.71 4.5 3
miR399a AtCS-C Dehydratase epimerase/racemase deaminase -0.70 4.8 2
miR399a TIP4;1 Aquaporin TIP4-1, transporter -0.68 4.8 3
miR399a AtPT2 Inorganic phosphate transporter 1-2 -0.67 5 1
miR399a SPPL5 Signal peptide peptidase-like 5, aspartic protease -0.67 5 6
miR399a AtSCAR4 Protein SCAR4 -0.62 5 6
miR399a AtPP2-A5 Protein PHLOEM PROTEIN 2-LIKE A5 -0.59 4 6
miR399a AT3G18620 DHHC-type zinc finger family protein -0.59 4.8 3
miR399a AtCFM2 Involved in group I and group II intron splicing. -0.59 4.5 6
miR399a AT1G61860 Protein kinase family protein -0.58 4.8 3
miR399a AT2G31150 ATP binding / ATPase -0.58 5 6
miR399a AT3G44820 Phototropic-responsive NPH3 family protein -0.58 4.8 3
miR399a IPGAM1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1 -0.57 5 3
miR399a AT2G25420 mRNA splicing factor esterase kinase inhibitor -0.57 4 6
miR399a AtOPR1 12-oxophytodienoate reductase 1 -0.57 4.8 3
miR399a AT4G19520 TIR-NBS-LRR class disease resistance protein -0.56 5 6
miR399a OZS2 Pectinesterase/pectinesterase inhibitor 3 -0.55 4.8 3
miR399a AT2G38740 Phosphatase -0.55 4.5 2
miR399a BLH1 BEL1-like homeodomain protein 1 -0.53 4.2 3
miR399a TGA7 Transcription factor TGA7 -0.51 5 3
miR399a AT1G61590 Protein kinase superfamily protein -0.51 4.8 3
miR399a CYP705A30 Cytochrome P450, family 705, subfamily A, polypeptide 30 -0.44 2 3
miR399a PHO2 Mediates degradation of PHO1 and PHT1s -0.37 0.8 /
miR399a NF-YA10 Nuclear transcription factor Y subunit A-10 -0.10 2.5 1
miR399d XLOC_001691 / -0.74 5 1
miR399b XLOC_026270 / -0.68 5 6
miR399e XLOC_013661 / -0.64 5 2
miR399b XLOC_013840 / -0.63 4.5 6
miR399e XLOC_026270 / -0.62 4.5 6
miR399e XLOC_003248 / -0.60 5 3
miR399e XLOC_001806 / -0.59 4.8 5
miR399a XLOC_018338 / -0.58 4.5 5
miR399d XLOC_027498 / -0.58 4.8 6
miR399d XLOC_010238 / -0.57 4.8 3
miR399c-5p XLOC_019368 / -0.57 5 4
miR399c-3p XLOC_016349 / -0.53 4 6
miR399b XLOC_020833 / -0.53 5 3
miR399a XLOC_008029 / -0.51 5 6
miR399c-3p XLOC_005358 / -0.50 4.8 6
miR399f XLOC_026270 / -0.50 4.5 6
  1. Note:
  2. aColumn3 describes functions of targeted genes of miR399
  3. bPCC refers the expression correlation of miR399 and its target genes
  4. cTarget score is the target match score calculated by psRobot, and lower target score represents better base pair match between miRNA and targets
  5. dThe last column indicates the cluster that target genes or lncRNAs belonging to