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Table 3 Regions detected on B chromosomes of Siberian roe deer and grey brocket deer with flow-sorted chromosome sequencing

From: Contrasting origin of B chromosomes in two cervids (Siberian roe deer and grey brocket deer) unravelled by chromosome-specific DNA sequencing

Region

Genes

Siberian roe deer (Capreolus pygargus)

 chr3:74,548,027-76,486,586

LRRIQ3, FPGT, TNNI3K (f)

 chr28:11,359,721-11,400,841

-

Grey brocket deer (Mazama gouazoubira)

 chr1:80,557,678-80,815,945

LPP (f)

 chr1:132,195,520-132,248,825

PIK3CB (f)

 chr3:53,939,956-54,035,661

GFI1

 chr3:97,346,492-97,530,439

ACOT11 (f), SSBP3 (f)

 chr5:112,038,039-112,092,762

CCND2

 chr6:67,475,289-69,302,666

COX7B2, GABRA4, GABRB1 (f?), LOC536190 (f?), ATP10D, NFXL1, CNGA1, NIPAL1, TXK

 chr6:72,725,708-72,802,304

KIT (f)

 chr6:101,762,919-101,983,089

COQ2, HPSE, MIR2446, MRPS18C, FAM175A (f)

 chr6:115,148,215-115,688,073

MIR2448, FBXL5, CD38 (f?), FGFBP1

 chr7:11,112,904-11,187,619

MAN2B1 (f)

 chr7:21,377,048-21,645,864

-

 chr8:78,145-782,808

ANXA10, MIR2466

 chr10:28,363,651-29,133,083

TMCO5B

 chr14:5,823,596-6,377,396

KHDRBS3 (f)

 chr17:46,546,364-46,775,437

MBD3L1, CHFR, ZNF268 (f)

 chr19:59,129,525-59,366,644

CDC42EP4, FAM104A, COG1 (f)

 chr22:1,765,826-1,920,639

EOMES (f)

 chr22:11,626,319-11,984,586

ACAA1, MYD88, OXSR1, XYLB, ACVR2B, DLEC1 (f)

 chr23:8,994,141-9,084,277

C23H6orf106 (f), SNRPC (f)

 chr23:50,678,412-50,701,238

SERPINB9

 chr25:37,085,021-37,276,232

-

 chr25:41,480,442-41,787,784

-

 chr28:628,155-915,003

TRIM67, FAM89A, ARV1, TTC13 (f)

 chr28:12,110,619-12,174,951

RET

 chr29:34,728,621-35,503,130

OPCML (f)

 chr29:49,338,779-50,252,639

DHCR7 (f?), NADSYN1, CARS (f)

  1. Coordinates in cattle genome assembly (bosTau7) are given. Only RefSeq cattle genes are listed, (f) – partial gene fragments located at region margins, (f?) – genes overlapping putative deletions not covered by reads