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Table 4 Classification and key characteristics of TE families in the genome of F. poae 2516. Elements below the length threshold for RIP are not included (MITE, ZIT1). Repetitive elements such as the rDNA tandem and two families of telomere linked RecQ helicases are not included. Nomenclature of TEs is as recommended in literature [73]. R retrotransposon, D DNA transposon, L long terminal repeat (LTR), T terminal inverted repeat (TIR), G Gypsy, C Copia, F Fot1/Pogo, T Tc1/mariner, M Mutator, A hAT, x unknown. n/a designates instances where a TIR/LTR could not be detected for a specific element

From: Living apart together: crosstalk between the core and supernumerary genomes in a fungal plant pathogen

  Core Supernumerary Size (bp) LTR/TIR (bp) Family
Intact RIP Intact RIP
Retrotransposons
 RLG_Maggy 27 25 11 - 5684 240 Gypsy/Ty3 like
 RLG_Skippy 5 7 13 - 6561 379 Gypsy/Ty3 like
 RLC_Ghost - 1 14 - 4900 195 Copia/Ty1 like
 Rxx_marsu - - 30 - 2234 n/a unknown
DNA transposons
 DTF_Fot4 1 - - - 1852 48 Pogo
 DTF_Fot8 - - 1 - 2133 43 Pogo
 DTF_Fot2 - 2 41 - 2220 90 Pogo
 DTF_Fot3-A - 1 7 - 2212 75 Pogo
 DTF_Fot3-B - 1 20 - 2200 73 Pogo
 DTF_Fot3-C - - 9 - 2203 73 Pogo
 DTF_Fot5-A 40 10 9 - 1865 51 Pogo
 DTF_Fot5-C - 15 7 - 1865 51 Pogo
 DTF_ESP4-A - - 21 - 2909 98 Pogo
 DTF_ESP4-B 12 11 24 - 2868 90 Pogo
 DTF_Drogon 33 - 24 - 1934 51 Pogo
 DTF_Viserion 8 6 8 - 2885 84 Pogo
 DTF_Rhaegal - 1 10 - 1854 36 Pogo
 DTF_Balerion - - 12 - 2749 79 Pogo
 DTA_RLT1 - - 17 - 2912 27 hAT-like
 DTA_RLT2 - - 11 - 2975 22 hAT-like
 DTA_RLT3 - - 12 - 2954 n/a hAT-like
 DTA_Hornet1 - 1 10 - 2613 n/a hAT-like
 DTA_Hornet2 - - 22 - 2739 n/a hAT-like
 DTA_Hornet3 - - 11 - 2965 n/a hAT-like
 DTA_Tfo1 - - 20 - 2852 28 hAT-like
 DTA_Tfo2 - - 15 - 2838 26 hAT-like
 DTA_Drifter - - 23 - 2779 n/a hAT-like
 DTA_Obara - - 13 - 3867 19 hAT-like
 DTA_Nymeria - - 36 - 2850 30 hAT-like
 DTA_Obella - - 5 - 2480 29 hAT-like
 DTA_Sarella - - 12 - 4236 n/a hAT-like
 DTM_Hop7 8 10 2 - 3449 81 Mutator
 DTM_Hop4 1 - 7 - 2825 97 Mutator