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Table 3 Enrichment pathway analysis of DEGs in P. digitatum

From: Transcriptional profiling analysis of Penicillium digitatum, the causal agent of citrus green mold, unravels an inhibited ergosterol biosynthesis pathway in response to citral

Pathway

DEGs genes with pathway annotation (3232)

All genes with pathway annotation (8714)

Pathway ID

ABC transporters

64 (1.98 %)

134 (1.54 %)

ko02010

Ribosome biogenesis in eukaryotes

78 (2.41 %)

171 (1.96 %)

ko03008

Alanine, aspartate and glutamate metabolism

40 (1.24 %)

83 (0.95 %)

ko00250

Starch and sucrose metabolism

175 (5.41 %)

426 (4.89 %)

ko00500

RNA degradation

91 (2.82 %)

213 (2.44 %)

ko03018

Fatty acid biosynthesis

28 (0.87 %)

62 (0.71 %)

ko00061

Non-homologous end-joining

21 (0.65 %)

45 (0.52 %)

ko03450

MAPK signaling pathway

88 (2.72 %)

221 (2.54 %)

ko04011

Amino sugar and nucleotide sugar metabolism

98 (3.03 %)

248 (2.85 %)

ko00520

Fructose and mannose metabolism

90 (2.78 %)

230 (2.64 %)

ko00051

Phosphatidylinositol signaling system

22 (0.68 %)

53 (0.61 %)

ko04070

Sulfur metabolism

16 (0.5 %)

38 (0.44 %)

ko00920

Nitrogen metabolism

38 (1.18 %)

98 (1.12 %)

ko00910

Meiosis

80 (2.48 %)

210 (2.41 %)

ko04113

Inositol phosphate metabolism

30 (0.93 %)

79 (0.91 %)

ko00562

Purine metabolism

121 (3.74 %)

326 (3.74 %)

ko00230

Citrate cycle (TCA cycle)

21 (0.65 %)

56 (0.64 %)

ko00020

Linoleic acid metabolism

36 (1.11 %)

97 (1.11 %)

ko00591

Glycolysis/Gluconeogenesis

64 (1.98 %)

173 (1.99 %)

ko00010

mRNA surveillance pathway

55 (1.7 %)

150 (1.72 %)

ko03015

Glutathione metabolism

29 (0.9 %)

80 (0.92 %)

ko00480

Pentose phosphate pathway

17 (0.53 %)

48 (0.55 %)

ko00030

RNA transport

94 (2.91 %)

267 (3.06 %)

ko03013

Pyrimidine metabolism

86 (2.66 %)

247 (2.83 %)

ko00240

RNA polymerase

24 (0.74 %)

73 (0.84 %)

ko03020

DNA replication

32 (0.99 %)

96 (1.1 %)

ko03030

Peroxisome

42 (1.3 %)

127 (1.46 %)

ko04146

Steroid biosynthesis

20 (0.62 %)

64 (0.73 %)

ko00100

Oxidative phosphorylation

47 (1.45 %)

144 (1.65 %)

ko00190

Biosynthesis of unsaturated fatty acids

14 (0.43 %)

53 (0.61 %)

ko01040

Fatty acid metabolism

43 (1.33 %)

147 (1.69 %)

ko00071

Aminoacyl-tRNA biosynthesis

29 (0.9 %)

109 (1.25 %)

ko00970

Plant-pathogen interaction

1 (0.03 %)

11 (0.13 %)

ko04626

Ribosome

33 (1.02 %)

224 (2.57 %)

ko03010