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Table 1 A. alata pooled transcriptome assembly statistics

From: A new transcriptome and transcriptome profiling of adult and larval tissue in the box jellyfish Alatina alata: an emerging model for studying venom, vision and sex

  Whole transcriptome Filtered transcriptome (fpkm = 1.5)
No. of transcripts 126,484 31,776
No. of genes 84,124 20,173
Total assembled bases (bp) 125,647,941 48,556,932
Avg (mean) transcript length (bp) 993 1528
Median transcript length (bp) 456 989
Max transcript length (bp) 9993 9993
N50 1994 2545
GC content (%) 39 40
Percent proper pairs 77 78
Samtools percent mapped and paired 75 77
  1. De novo assembly began with 264,505,922 trimmed raw reads generated from medusa gastric cirri, ovaries, tentacle (with pedalium base), rhopalium, and planulae samples