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Table 2 Number of differentially expressed genes (DEGs, FDR < 0.01) and enrichment test for secretion for each contrasting conditions

From: Global transcriptional analysis suggests Lasiodiplodia theobromae pathogenicity factors involved in modulation of grapevine defensive response

Contrasting conditions

Regulation

Differentially expressed genes (DEGs)

Predicted secreted DEGs

FDR (hypergeometric test for enrichment of secreted proteins)

FWS/F

Up-regulated

905

83

0.156003

Down-regulated

887

74

0.549571

FWS/FW

Up-regulated

173

13

0.707640

Down-regulated

233

17

0.770976

FW/F

Up-regulated

565

61

0.012635

Down-regulated

424

47

0.554427

FS/F

Up-regulated

203

23

0.077195

Down-regulated

366

28

0.738934