From: Transcriptome comparison reveals key candidate genes in response to vernalization of Oriental lily
Unigene id | Protein description | Forward primer sequence (5′–3′) | Reverse primer sequence (5′–3′) | Length (bp) | Correlation between RNA-Seq and qRT-PCR (r2) |
---|---|---|---|---|---|
Contig6022 | FLOWERING LOCUS C | CCTGGTGGAGAAGACGATGAGTG | AACAAGATCAGCCGCCAAGTCA | 117 | 0.98 |
Contig27291 | Vernalization 2 | GCTGCCAAACCCTGGTCATCA | CATTATGCCTGGTGGTGAGTTCCC | 111 | 0.99 |
Contig62859 | FT-like protein | GCGGCAACGATCTCAGAA | CTCAAATATGGGTTACTGGGACTC | 89 | 0.95 |
Contig88790 | AP2–type transcription factor | GGTTTACTTGGGTGGTTTC | TCCTCCTTCGTCAGATTG | 153 | 0.97 |
Contig3170 | Suppressor of overexpression of CO1 | GCCTCGTGAAGAAGA | CTCCAACAGAATCCTC | 122 | 0.94 |
Contig88645 | CBF–like transcription factor | CAACTCGCTGGATGGCTGCT | GCCACTCCGCCACACTCAAT | 115 | 0.98 |
Contig13712 | LFY | CGAAGAAGAACGGGCTGGACTACT | AGGCAGTGGAAGGCGTAGCA | 134 | 0.94 |
Contig22259 | Maf–like protein | CAAGATTCAAACCCGAGATG | CGAGACGATGATGAGGAT | 99 | 0.94 |
Contig76906 | Auxin response factor 10 | TAGATGGCACGGGCGAATATACCT | CACACGCAGCCTCTTCACAGT | 113 | 0.97 |
Contig27171 | IAA type protein | GTTCTCTTGCTTCACCATC | ACATACTCCGTTCCATTCA | 104 | 0.98 |