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Table 1 Primers used in real-time quantitative PCR (RT-qPCR)

From: Transcriptome comparison reveals key candidate genes in response to vernalization of Oriental lily

Unigene id

Protein description

Forward primer sequence (5′–3′)

Reverse primer sequence (5′–3′)

Length (bp)

Correlation between RNA-Seq and qRT-PCR (r2)

Contig6022

FLOWERING LOCUS C

CCTGGTGGAGAAGACGATGAGTG

AACAAGATCAGCCGCCAAGTCA

117

0.98

Contig27291

Vernalization 2

GCTGCCAAACCCTGGTCATCA

CATTATGCCTGGTGGTGAGTTCCC

111

0.99

Contig62859

FT-like protein

GCGGCAACGATCTCAGAA

CTCAAATATGGGTTACTGGGACTC

89

0.95

Contig88790

AP2–type transcription factor

GGTTTACTTGGGTGGTTTC

TCCTCCTTCGTCAGATTG

153

0.97

Contig3170

Suppressor of overexpression of CO1

GCCTCGTGAAGAAGA

CTCCAACAGAATCCTC

122

0.94

Contig88645

CBF–like transcription factor

CAACTCGCTGGATGGCTGCT

GCCACTCCGCCACACTCAAT

115

0.98

Contig13712

LFY

CGAAGAAGAACGGGCTGGACTACT

AGGCAGTGGAAGGCGTAGCA

134

0.94

Contig22259

Maf–like protein

CAAGATTCAAACCCGAGATG

CGAGACGATGATGAGGAT

99

0.94

Contig76906

Auxin response factor 10

TAGATGGCACGGGCGAATATACCT

CACACGCAGCCTCTTCACAGT

113

0.97

Contig27171

IAA type protein

GTTCTCTTGCTTCACCATC

ACATACTCCGTTCCATTCA

104

0.98