Transcriptome comparison reveals key candidate genes in response to vernalization of Oriental lily

BMC Genomics

Table 4 The KEGG biochemical pathways categorization of Oriental hybrid lily unigenes pathways

KEGG Categories	Mapped–KO	Unigene–NUM	Ratio of No.	Pathway–ID
DNA replication	32	42	0.25	ko03030
Oocyte meiosis	32	93	0.56	ko04114
N–Glycan biosynthesisn	32	54	0.33	ko00510
Proteasome	33	129	0.78	ko03050
Glycerophospholipid metabolism	34	73	0.44	ko00564
Arginine and proline metabolism	34	69	0.42	ko00330
Nucleotide excision repair	35	122	0.73	ko03420
Starch and sucrose metabolism	36	52	0.31	ko00500
Peroxisome	37	75	0.45	ko04146
Amino sugar and nucleotide sugar metabolism	37	74	0.45	ko00520
Viral carcinogenesis	39	81	0.49	ko05203
Plant hormone signal transduction	39	70	0.42	ko04075
Endocytosis	39	191	1.2	ko04144
Meiosis–yeast	41	89	0.54	ko04113
Photosynthesis	42	65	0.39	ko00195
HTLV–I infection	46	147	0.89	ko05166
mRNA surveillance pathway	47	140	0.84	ko03015
RNA degradation	49	139	0.84	ko03018
Cell cycle–yeast	53	103	0.62	ko04111
Ribosome biogenesis in eukaryotes	56	256	1.54	ko03008
Cell cycle	56	160	0.96	ko04110
Epstein–Barr virus infection	58	177	1.07	ko05169
Ubiquitin mediated proteolysis	60	149	0.90	ko04120
Pyrimidine metabolism	72	278	1.67	ko00240
Protein processing in endoplasmic reticulum	74	228	1.37	ko04141
Oxidative phosphorylation	81	192	1.16	ko00190
Purine metabolism	83	183	1.10	ko00230
RNA transport	89	184	1.11	ko03013
Biosynthesis of amino acids	96	250	1.51	ko01230
Spliceosome	99	230	1.39	ko03040
Ribosome	119	289	1.74	ko03010
Microbial metabolism in diverse environments	125	413	2.49	ko01120
Biosynthesis of secondary metabolites	333	965	5.81	ko01110
Metabolic pathways	781	1880	11.32	ko01100
Others	2243	8274	49.8

ISSN: 1471-2164