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Table 9 Results of QPCR analysis of genes appearing in the top 25 up and down-regulated gene lists for parasitized and nonparasitized lean and siscowet lake trout (From Tables 5, 6, 7 and 8). Contigs provided in Additional file 2

From: Sea lampreys elicit strong transcriptomic responses in the lake trout liver during parasitism

    QPCR aRNA-seq
  Gene name Contig # Fold +/− p value Fold +/−
Lean interleukin-18-binding protein comp44889 26.4 0.004 9.51
fibulin 4 precursor comp81242 5.3 0.001 5.10
glucose-6-phosphate isomerase comp7122 3.2 0.004 2.36
6-phosphogluconate dehydrogenase, decarboxylating comp4673 3.4 0.005 2.77
ornithine decarboxylase comp4006 12.5 0.032 6.68
cyclic AMP-dependent transcription factor ATF-3 comp224599 42.8 0.091 19.03
indoleamine 2,3-dioxygenase 2 bcomp228271 −5.2 0.007  
indoleamine 2,3-dioxygenase 2 comp275449 −5.8 0.002 −6.87
adenylosuccinate synthetase isozyme 1 A comp122752 −4.1 0.001 −4.53
UDP-glucuronosyltransferase 2A2 comp11363 −3.8 0.001 −4.53
phosphotriesterase related comp61354 −9.0 0.010 −14.52
aspartoacylase comp190057 −4.4 0.001 −4.99
Siscowet growth arrest and DNA damage inducible protein comp8599 7.5 0.012 7.01
chemokine-like receptor 1 comp22172 3.3 0.038 6.59
interleukin-18-binding protein comp44889 6.8 0.054 7.46
dual specificity protein phosphatase 2 comp204068 59.1 0.070 16.34
ubiquitin carboxyl-terminal hydrolase 24 comp72729 2.9 0.004 4.96
phosphotriesterase related comp61354 −9.7 0.003 −7.26
DNA damage-regulated autophagy modulator protein 2 comp92592 −7.0 0.008 −5.86
indoleamine 2,3-dioxygenase 2 comp275449 −3.0 0.019 −5.62
indoleamine 2,3-dioxygenase 2 comp228271 −5.7 0.001 −8.34
GTP-binding protein Rhes comp55581 −8.3 0.003 −11.39
C-C motif chemokine 19 comp242068 −7.6 0.003 −11.47
  1. awhen present multiple times or in both DESeq2 and edgeR analyses, is the average fold change of all occurrences
  2. bcontig, comp228271, was not represented in parasitized leans but was still tested by QPCR