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Table 2 Summary statistics for sequence quality and alignment information of six breast muscle samples in two groups

From: High concentrations of atmospheric ammonia induce alterations of gene expression in the breast muscle of broilers (Gallus gallus) based on RNA-Seq

Sample C_1 C_2 C_3 T_1 T_2 T_3
Group Control Control Control Treatment Treatment Treatment
Raw reads 73,139,016 73,988,890 70,579,138 74,086,562 82,677,190 100,025,614
Clean reads 69,375,390 70,089,536 66,879,214 70,162,270 78,368,448 94,553,606
Valid ratio (%) 94.81 % 94.68 % 94.71 % 94.66 % 94.75 % 94.49 %
Q30 (%) 94.90 % 94.75 % 94.79 % 95.04 % 95.11 % 94.92 %
GC content (%) 51.50 % 51.50 % 51.50 % 51.50 % 51.50 % 51.50 %
Total mapped reads 49,236,780 49,313,882 47,427,718 50,794,372 57,048,473 69,576,797
Uniquely mapped reads 45,869,880 45,818,693 44,268,019 47,090,588 52,708,435 64,514,418
Multiple mapped reads 3,366,900 3,495,189 3,159,699 3,703,784 4,340,038 5,062,379
Mapping rate (%) 70.97 % 70.36 % 70.92 % 72.40 % 72.80 % 73.58 %