Skip to main content

Table 2 Summary statistics for sequence quality and alignment information of six breast muscle samples in two groups

From: High concentrations of atmospheric ammonia induce alterations of gene expression in the breast muscle of broilers (Gallus gallus) based on RNA-Seq

Sample

C_1

C_2

C_3

T_1

T_2

T_3

Group

Control

Control

Control

Treatment

Treatment

Treatment

Raw reads

73,139,016

73,988,890

70,579,138

74,086,562

82,677,190

100,025,614

Clean reads

69,375,390

70,089,536

66,879,214

70,162,270

78,368,448

94,553,606

Valid ratio (%)

94.81 %

94.68 %

94.71 %

94.66 %

94.75 %

94.49 %

Q30 (%)

94.90 %

94.75 %

94.79 %

95.04 %

95.11 %

94.92 %

GC content (%)

51.50 %

51.50 %

51.50 %

51.50 %

51.50 %

51.50 %

Total mapped reads

49,236,780

49,313,882

47,427,718

50,794,372

57,048,473

69,576,797

Uniquely mapped reads

45,869,880

45,818,693

44,268,019

47,090,588

52,708,435

64,514,418

Multiple mapped reads

3,366,900

3,495,189

3,159,699

3,703,784

4,340,038

5,062,379

Mapping rate (%)

70.97 %

70.36 %

70.92 %

72.40 %

72.80 %

73.58 %