Fig. 6

Imputation accuracy across the genome at a comprehensive set of dense markers. A) Accuracy of alleles imputed across all autosomes at 7,655,491 possible sites, and B) fraction of markers which were imputed using hard probability thresholds for calling genotypes, as described in Results. Data represent accuracy of alleles at dense markers for 12 pedigree members with GBS data, imputed from individuals B, H, J, and F, called using the “Threshold” method for calling genotypes. Circles denote individual animals as indicated in the legend; we note that not every individual may be distinguished in these graphs due to overlapping values