Identification of protein-damaging mutations in 10 swine taste receptors and 191 appetite-reward genes

Clop, Alex; Sharaf, Abdoallah; Castelló, Anna; Ramos-Onsins, Sebastián; Cirera, Susanna; Mercadé, Anna; Derdak, Sophia; Beltran, Sergi; Huisman, Abe; Fredholm, Merete; van As, Pieter; Sánchez, Armand

doi:10.1186/s12864-016-2972-z

BMC Genomics

Table 3 List of rare H variants

From: Identification of protein-damaging mutations in 10 swine taste receptors and 191 appetite-reward genes

Variant ID	Effect	Gene	pMAF
chr12_15398873_C_T	STOP_GAINED	ACE	0.0017
chr12_62594159_A_G	START_LOST	ALDH3A2	0.0086
chr7_103136276_A_G	START_LOST	ALDH6A1	0.0017
chr7_103129739_C_G	SPLICE_SITE_ACCEPTOR	ALDH6A1	0.0034
chr9_110061864_G_A	STOP_GAINED	CD36	0.0017
chr7_28072405_A_C	SPLICE_SITE_DONOR	NOTCH4	0.0017
JH118674.1_43285_C_T	SPLICE_SITE_DONOR	GRIA1 ortholog (ENSSSCG00000024560)	0.0049
chr16_66618439_A_T	START_LOST	GABRG2	0.0091
chr16_66618438_C_A,T	START_LOST	GABRG2	0.0017
chr1_64002416_A_G	SPLICE_SITE_DONOR	GABRR1	0.0034
GL896494.1_7864_G_T	STOP_GAINED	GPR179	0.0052
chr13_203412188_T_A	SPLICE_SITE_ACCEPTOR	GRIK1	0.0058
chr1_77441762_G_A	SPLICE_SITE_ACCEPTOR	GRIK2	0.0034
chr6_49600987_C_T	SPLICE_SITE_DONOR	GRIN2D	0.0034
chr6_49600986_A_G	SPLICE_SITE_DONOR	GRIN2D	0.0034
chr13_37136736_G_T	SPLICE_SITE_ACCEPTOR	GRM2	0.0017
chr13_37136747_T_G	SPLICE_SITE_DONOR	GRM2	0.0034
chr7_34927184_A_C	SPLICE_SITE_DONOR	GRM4	0.0017
chr7_34893335_T_G	SPLICE_SITE_ACCEPTOR	GRM4	0.0017
chr18_3214922_AC_A	FRAME_SHIFT	HTR5A_human_ortholog (ENSSSCG00000030573)	0.0030
chr18_3151609_AG_A	FRAME_SHIFT	HTR5A_human_ortholog (ENSSSCG00000023549)	0.0020
chr3_55922763_C_T	SPLICE_SITE_ACCEPTOR	NPAS2	0.0020
chr1_14768986_T_G	SPLICE_SITE_ACCEPTOR	OPRM1	0.0017
chr5_85218678_C_A	STOP_GAINED	PAH ortholog (ENSSSCG00000000856)	0.0017
chr5_85218708_C_A	STOP_GAINED	PAH ortholog (ENSSSCG00000000856)	0.0017
chr5_85218747_G_T	SPLICE_SITE_DONOR	PAH ortholog (ENSSSCG00000000856)	0.0017
chr3_23446168_C_T	STOP_GAINED	SCNN1G	0.0017
chr16_85870363_G_C	SPLICE_SITE_DONOR	SLC6A3	0.0017
chr16_85870364_T_A	SPLICE_SITE_DONOR	SLC6A3	0.0017
chr6_58114941_G_A	STOP_GAINED	TAS1R3	0.0016
chr6_62357984_C_T	STOP_GAINED	TAS1R1	0.0065
chr6_62363203_G_C	STOP_LOST	TAS1R1	0.0065

The variant identifier (ID) contains information on chromosome _ position _ reference allele _ alternative allele

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ISSN: 1471-2164

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