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Table 3 List of rare H variants

From: Identification of protein-damaging mutations in 10 swine taste receptors and 191 appetite-reward genes

Variant ID Effect Gene pMAF
chr12_15398873_C_T STOP_GAINED ACE 0.0017
chr12_62594159_A_G START_LOST ALDH3A2 0.0086
chr7_103136276_A_G START_LOST ALDH6A1 0.0017
chr7_103129739_C_G SPLICE_SITE_ACCEPTOR ALDH6A1 0.0034
chr9_110061864_G_A STOP_GAINED CD36 0.0017
chr7_28072405_A_C SPLICE_SITE_DONOR NOTCH4 0.0017
JH118674.1_43285_C_T SPLICE_SITE_DONOR GRIA1 ortholog (ENSSSCG00000024560) 0.0049
chr16_66618439_A_T START_LOST GABRG2 0.0091
chr16_66618438_C_A,T START_LOST GABRG2 0.0017
chr1_64002416_A_G SPLICE_SITE_DONOR GABRR1 0.0034
GL896494.1_7864_G_T STOP_GAINED GPR179 0.0052
chr13_203412188_T_A SPLICE_SITE_ACCEPTOR GRIK1 0.0058
chr1_77441762_G_A SPLICE_SITE_ACCEPTOR GRIK2 0.0034
chr6_49600987_C_T SPLICE_SITE_DONOR GRIN2D 0.0034
chr6_49600986_A_G SPLICE_SITE_DONOR GRIN2D 0.0034
chr13_37136736_G_T SPLICE_SITE_ACCEPTOR GRM2 0.0017
chr13_37136747_T_G SPLICE_SITE_DONOR GRM2 0.0034
chr7_34927184_A_C SPLICE_SITE_DONOR GRM4 0.0017
chr7_34893335_T_G SPLICE_SITE_ACCEPTOR GRM4 0.0017
chr18_3214922_AC_A FRAME_SHIFT HTR5A_human_ortholog (ENSSSCG00000030573) 0.0030
chr18_3151609_AG_A FRAME_SHIFT HTR5A_human_ortholog (ENSSSCG00000023549) 0.0020
chr3_55922763_C_T SPLICE_SITE_ACCEPTOR NPAS2 0.0020
chr1_14768986_T_G SPLICE_SITE_ACCEPTOR OPRM1 0.0017
chr5_85218678_C_A STOP_GAINED PAH ortholog (ENSSSCG00000000856) 0.0017
chr5_85218708_C_A STOP_GAINED PAH ortholog (ENSSSCG00000000856) 0.0017
chr5_85218747_G_T SPLICE_SITE_DONOR PAH ortholog (ENSSSCG00000000856) 0.0017
chr3_23446168_C_T STOP_GAINED SCNN1G 0.0017
chr16_85870363_G_C SPLICE_SITE_DONOR SLC6A3 0.0017
chr16_85870364_T_A SPLICE_SITE_DONOR SLC6A3 0.0017
chr6_58114941_G_A STOP_GAINED TAS1R3 0.0016
chr6_62357984_C_T STOP_GAINED TAS1R1 0.0065
chr6_62363203_G_C STOP_LOST TAS1R1 0.0065
  1. The variant identifier (ID) contains information on chromosome _ position _ reference allele _ alternative allele