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Table 4 Number of variants and number of unique variants within each breed and per impact class

From: Identification of protein-damaging mutations in 10 swine taste receptors and 191 appetite-reward genes

 

Duroc

Pietrain

Large white

Landrace

Bazna

Mangalitza

Iberian

Majorcan black

Wild boar

Asian

Variant effect

nr (%)

nr unique

nr (%)

nr unique

nr (%)

nr unique

nr (%)

nr unique

nr (%)

nr unique

nr (%)

nr unique

nr (%)

nr unique

nr (%)

nr unique

nr (%)

nr unique

nr (%)

nr unique

Strong impact

133 (12.7)

1

144 (10.9)

1

140 (10.5)

1

124 (9.4)

0

99 (10.2)

2

87 (11.3)

4

92 (12.3)

2

90 (10.4)

1

123 (12.4)

6

163 (10.2)

26

High

44 (4.2)

1

46 (3.5)

0

49 (3.7)

0

33 (2.5)

0

28 (2.9)

0

29 (3.8)

1

30 (4.0)

1

30 (3.5)

0

35 (3.5)

0

48 (3.0)

9

Moderate_Deleterious

89 (8.5)

0

98 (7.4)

1

91 (6.8)

1

91 (6.9)

0

71 (7.3)

2

58 (7.5)

3

62 (8.3)

1

60 (6.9)

1

88 (8.9)

6

115 (7.2)

17

Mild impact

909 (87.3)

5

1177 (89.1)

5

1194 (89.5)

5

1195 (90.6)

3

868 (89.8)

11

685 (88.7)

8

654 (87.7)

9

778 (89.6)

21

870 (87.6)

32

1426 (89.7)

195

 Moderate_Tolerated

279 (26.8)

4

342 (25.9)

1

332 (24.9)

2

342 (25.9)

1

257 (26.6)

2

192 (24.9)

2

187 (25.1)

5

223 (25.7)

9

252 (25.4)

15

389 (24.5)

50

Low

630 (60.5)

1

835 (63.2)

4

862 (64.6)

3

853 (64.7)

2

611 (63.2)

9

493 (63.8)

6

467 (62.6)

4

555 (63.9)

12

618 (62.2)

17

1037 (65.3)

145

Total

1042

6 (0.6 %)a

1321

6 (0.5 %)a

1334

6 (0.4 %)a

1319

3 (0.2 %)a

967

13 (1.3 %)a

772

12 (1.6 %)a

746

11 (1.5 %)a

868

22 (2.5 %)a

993

38 (3.8 %)a

1589

221 (13.9 %)a

Pool size

45

41

39

40

15

12

13

17

22

22

  1. This table was done using the 2,574 variants in TASR and AR genes including the multi-allelic with different effects and these with the alternative allele fixed in all the populations
  2. aPercentage of variants that are breed-specific