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Table 4 Number of variants and number of unique variants within each breed and per impact class

From: Identification of protein-damaging mutations in 10 swine taste receptors and 191 appetite-reward genes

  Duroc Pietrain Large white Landrace Bazna Mangalitza Iberian Majorcan black Wild boar Asian
Variant effect nr (%) nr unique nr (%) nr unique nr (%) nr unique nr (%) nr unique nr (%) nr unique nr (%) nr unique nr (%) nr unique nr (%) nr unique nr (%) nr unique nr (%) nr unique
Strong impact 133 (12.7) 1 144 (10.9) 1 140 (10.5) 1 124 (9.4) 0 99 (10.2) 2 87 (11.3) 4 92 (12.3) 2 90 (10.4) 1 123 (12.4) 6 163 (10.2) 26
High 44 (4.2) 1 46 (3.5) 0 49 (3.7) 0 33 (2.5) 0 28 (2.9) 0 29 (3.8) 1 30 (4.0) 1 30 (3.5) 0 35 (3.5) 0 48 (3.0) 9
Moderate_Deleterious 89 (8.5) 0 98 (7.4) 1 91 (6.8) 1 91 (6.9) 0 71 (7.3) 2 58 (7.5) 3 62 (8.3) 1 60 (6.9) 1 88 (8.9) 6 115 (7.2) 17
Mild impact 909 (87.3) 5 1177 (89.1) 5 1194 (89.5) 5 1195 (90.6) 3 868 (89.8) 11 685 (88.7) 8 654 (87.7) 9 778 (89.6) 21 870 (87.6) 32 1426 (89.7) 195
 Moderate_Tolerated 279 (26.8) 4 342 (25.9) 1 332 (24.9) 2 342 (25.9) 1 257 (26.6) 2 192 (24.9) 2 187 (25.1) 5 223 (25.7) 9 252 (25.4) 15 389 (24.5) 50
Low 630 (60.5) 1 835 (63.2) 4 862 (64.6) 3 853 (64.7) 2 611 (63.2) 9 493 (63.8) 6 467 (62.6) 4 555 (63.9) 12 618 (62.2) 17 1037 (65.3) 145
Total 1042 6 (0.6 %)a 1321 6 (0.5 %)a 1334 6 (0.4 %)a 1319 3 (0.2 %)a 967 13 (1.3 %)a 772 12 (1.6 %)a 746 11 (1.5 %)a 868 22 (2.5 %)a 993 38 (3.8 %)a 1589 221 (13.9 %)a
Pool size 45 41 39 40 15 12 13 17 22 22
  1. This table was done using the 2,574 variants in TASR and AR genes including the multi-allelic with different effects and these with the alternative allele fixed in all the populations
  2. aPercentage of variants that are breed-specific