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Table 2 Summary statistics for SNV and INDEL

From: Design and application of a target capture sequencing of exons and conserved non-coding sequences for the rat

Strain

SNV

INDEL

 

Totala (Ti/Tv)

CDS (Ti/Tv)

UTR (Ti/Tv)

CNS (Ti/Tv)

Totala

CDS

UTR

CNS

WTC/Kyo

152,047 (2.43)

14,943 (3.61)

12,932 (2.46)

10,816 (2.31)

28,915

775

2,744

3,101

WTC-swh/Kyo

151,981 (2.42)

14,942 (3.61)

12,953 (2.45)

10,824 (2.30)

28,870

753

2,727

3,124

PVG/Seac

135,979 (2.43)

13,554 (3.56)

11,778 (2.48)

9,494 (2.36)

25,876

719

2,538

2,737

KFRS4/Kyo

134,604 (2.43)

13,266 (3.66)

11,466 (2.43)

9,489 (2.37)

25,578

677

2,439

2,759

  1. aTotal numbers of SNV and INDEL include all of those in depth ≥10 regardless of being in target regions or not. Ti/Tv is the ratio of transitions to transversions
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BMC Genomics

ISSN: 1471-2164

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