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Table 2 Summary statistics for SNV and INDEL

From: Design and application of a target capture sequencing of exons and conserved non-coding sequences for the rat

Strain SNV INDEL
  Totala (Ti/Tv) CDS (Ti/Tv) UTR (Ti/Tv) CNS (Ti/Tv) Totala CDS UTR CNS
WTC/Kyo 152,047 (2.43) 14,943 (3.61) 12,932 (2.46) 10,816 (2.31) 28,915 775 2,744 3,101
WTC-swh/Kyo 151,981 (2.42) 14,942 (3.61) 12,953 (2.45) 10,824 (2.30) 28,870 753 2,727 3,124
PVG/Seac 135,979 (2.43) 13,554 (3.56) 11,778 (2.48) 9,494 (2.36) 25,876 719 2,538 2,737
KFRS4/Kyo 134,604 (2.43) 13,266 (3.66) 11,466 (2.43) 9,489 (2.37) 25,578 677 2,439 2,759
  1. aTotal numbers of SNV and INDEL include all of those in depth ≥10 regardless of being in target regions or not. Ti/Tv is the ratio of transitions to transversions
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BMC Genomics

ISSN: 1471-2164

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